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Circular Genome View

How to use the Circular Genome View?

This tool is based on CGView (see cgview).

When you select the Circular Genome View functionality you obtain a global circular map of the selected sequence. Circles display (from the outside):

  1. Gene GC percent deviation (gene GC% - genome mean GC%).
  2. Predicted CDSs transcribed in the clockwise direction.
  3. Predicted CDSs transcribed in the counterclockwise direction.
  4. Gene GC skew (G-C/G+C).
  5. rRNA (blue), tRNA (green), misc_RNA (orange), transposable elements (chocolate) and pseudogenes (yellow).

Genes displayed in (2) and (3) are color-coded according different categories:

  • red and blue, MaGe validated annotations ;
  • orange: MicroScope automatic annotation with a reference genome ;
  • purple: Primary / Automatic annotations.