Skip to content
@labgem

labgem

Popular repositories

  1. PPanGGOLiN PPanGGOLiN Public

    Build a partitioned pangenome graph from microbial genomes

    Python 214 23

  2. PlaScope PlaScope Public

    🔬 ⭕ Plasmid exploration of bacterial genomes

    Roff 18 4

  3. netsyn netsyn Public

    NetSyn is a tool to detect conserved genomic contexts (i.e. synteny conservation) among a list of protein targets.

    Python 7 1

  4. pangenomeNEM pangenomeNEM Public

    C 4

  5. microscope-user-doc microscope-user-doc Public

    MicroScope Platform User Documentation

    3 6

  6. tenacity tenacity Public

    Forked from jd/tenacity

    Retrying library for Python

    Python 1

Repositories

Showing 10 of 10 repositories
  • PPanGGOLiN Public

    Build a partitioned pangenome graph from microbial genomes

    Python 214 23 16 8 Updated May 14, 2024
  • microscope-user-doc Public

    MicroScope Platform User Documentation

    3 6 0 0 Updated May 7, 2024
  • ASMC Public

    ASMC combines (i) homology modeling of family members (MODELLER), (ii) ligand-binding pocket search (P2RANK), (iii) structural alignment of modeled active sites (USalign) and (iv) density-based spatial clustering of obtained alignments (DBSCAN) in a single command line. Clustering step can be carried out on either structural or sequence alignment.

    Python 0 0 0 0 Updated Apr 24, 2024
  • asmc_2016 Public

    ASMC code from de Melo-Minardi et al. (2010) [doi: 10.1093/bioinformatics/btq595], updated in 2016.

    Shell 0 0 0 0 Updated Apr 16, 2024
  • netsyn Public

    NetSyn is a tool to detect conserved genomic contexts (i.e. synteny conservation) among a list of protein targets.

    Python 7 1 1 0 Updated Mar 28, 2024
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell 0 MIT 3,061 0 0 Updated Feb 13, 2023
  • phigaro Public Forked from bobeobibo/phigaro

    Phigaro is a scalable command-line tool for predicting phages and prophages

    HTML 0 MIT 15 0 0 Updated Apr 28, 2022
  • PlaScope Public

    🔬 ⭕ Plasmid exploration of bacterial genomes

    Roff 18 GPL-3.0 4 3 1 Updated Mar 2, 2022
  • pangenomeNEM Public
    C 4 0 6 1 Updated Dec 17, 2021
  • tenacity Public Forked from jd/tenacity

    Retrying library for Python

    Python 1 Apache-2.0 297 0 0 Updated Mar 18, 2021

Top languages

Loading…

Most used topics

Loading…