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Urai AE, Aguillon-Rodriguez V, Laranjeira I, Cazettes F, Laboratory TIB, Mainen ZF, Churchland AK (2020) Citric Acid water as an alternative to water scheduling in behaving mice. bioRxiv:2020.03.02.973016.
Jupyter Notebook MATLAB
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README.md

Citric Acid water as an alternative to water scheduling in behaving mice

Anne Urai, CSHL, 2020

Questions? anne.urai@internationalbrainlab.org

Instructions for reproducing the data analysis

1. clone GitHub repo

Clone (first time) or pull (after that) this citricAcid repository to a convenient place on your laptop

2. install datajoint environment

Create an Anaconda environment (e.g. djenv) that will have all your DataJoint things in it.

Activate that environment, then install DataJoint following these steps: https://tutorials.datajoint.io/setting-up/datajoint-python.html. See https://github.com/int-brain-lab/paper-behavior#obtain-a-datajoint-account-through-ibl-jupyterhub for instructions on how to obtain a DataJoint account.

Install all packages used in IBL: see https://github.com/int-brain-lab/paper-behavior#obtain-a-datajoint-account-through-ibl-jupyterhub. Make sure you can run Jupyter notebook within conda: conda install nb_conda_kernels and conda install nb_conda.

3. open Jupyter notebook

Notebooks are a nice way to run your code piece by piece and see the results. source activate djenv, jupyter notebook will open a folder where each notebook will reproduce one ore more figures.

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