Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Allow xr_kwargs #32

Merged
merged 13 commits into from
May 6, 2021
Merged

Allow xr_kwargs #32

Show file tree
Hide file tree
Changes from 5 commits
Commits
Show all changes
13 commits
Select commit Hold shift + click to select a range
8d07267
Update cat.py
aaronspring May 5, 2021
d4aefb9
Update source.py
aaronspring May 5, 2021
09f0019
Update cat.py
aaronspring May 5, 2021
c5e77eb
Update source.py
aaronspring May 5, 2021
ad84c4a
Update test_cat.py
aaronspring May 5, 2021
977cf2a
Update source.py
aaronspring May 5, 2021
88b45bd
Update cat.py
aaronspring May 5, 2021
58b88eb
Update test_cat.py
aaronspring May 5, 2021
0795a0b
Update cat.py
aaronspring May 6, 2021
5125f9f
fix
May 6, 2021
6e62019
fix tests
May 6, 2021
15f8f94
fix tests, fail for netcdfsource still
May 6, 2021
efcbaf0
working
May 6, 2021
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
4 changes: 4 additions & 0 deletions intake_thredds/cat.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,10 @@ class ThreddsCatalog(Catalog):
def __init__(self, url: str, driver: str = 'opendap', **kwargs):
self.url = url
self.driver = driver
if "decode_times" in kwargs:
aaronspring marked this conversation as resolved.
Show resolved Hide resolved
self.xarray_kwargs = {"xarray_kwargs": {"decode_times": kwargs["decode_times"]}}
else:
self.xarray_kwargs = {}
super().__init__(**kwargs)

def _load(self):
Expand Down
4 changes: 2 additions & 2 deletions intake_thredds/source.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -87,9 +87,9 @@ def _open_dataset(self):
break
path = self.path[i:]
if self.progressbar:
data = [ds.to_dask() for ds in tqdm(_match(cat, path), desc='Dataset(s)', ncols=79)]
data = [ds(**self.xarray_kwargs).to_dask() for ds in tqdm(_match(cat, path), desc='Dataset(s)', ncols=79)]
else:
data = [ds.to_dask() for ds in _match(cat, path)]
data = [ds(**self.xarray_kwargs).to_dask() for ds in _match(cat, path)]
self._ds = xr.combine_by_coords(data, combine_attrs='override')


Expand Down
3 changes: 2 additions & 1 deletion tests/test_cat.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -23,10 +23,11 @@ def test_ThreddsCatalog_init_catalog(thredds_cat_url):
assert 'random_attribute' in cat.metadata


@pytest.mark.parametrize('decode_times', [True, False])
@pytest.mark.parametrize('driver', ['netcdf', 'opendap'])
def test_ThreddsCatalog(thredds_cat_url, driver):
"""Test entry.to_dask() is xr.Dataset and allows opendap and netcdf as source."""
cat = intake.open_thredds_cat(thredds_cat_url, driver=driver)
cat = intake.open_thredds_cat(thredds_cat_url, driver=driver, decode_times=decode_times)
entry = cat['sst.mon.19712000.ltm.v3.nc']
if driver == 'opendap':
assert isinstance(entry, intake_xarray.opendap.OpenDapSource)
Expand Down