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README.md

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- for master branch.

Tools to analyse and manipulate DNA conformation

  • 3DNA should be installed
  • In x3dna-v2.4/config/misc_3dna.par we ususally change <hb_dist1>4.0</hb_dist1> to <hb_dist1>4.2</hb_dist1>. At least in 1KX5 nucleosome PDB this allows to detect all base pairs.
  • docker not working currently

TODO:

  • make docker image
  • make Curves functionality