pynucl

A library for comprehensive analysis of nucleosome structures and MD trajectories of nucleosomes.

Documentation is in progress. See examples folder for other analysis scripts.

Installation:

Python version 3.7

Required libraries (tested versions):

• matplotlib (3.1.3)
• seaborn (0.10.0)
• plotnine (0.6.0)
• numpy (1.17.3)
• scipy (1.3.2)
• pandas (1.0.1)
• tqdm (4.42.1)
• requests (2.23.0)
• nglview (2.7.1)
• Bio (0.3.0)
• MDAnalysis (1.0.0)
• seqplot
• DNAtools
• pymolint
• pytexshade

Other software

• 3DNA should be in PATH for the python interpreter.

Install with pip

git clone https://github.com/intbio/pynucl
pip install -e pynucl