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Update galaxy.rst
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Daniela Butano committed Sep 9, 2019
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Showing 1 changed file with 8 additions and 9 deletions.
17 changes: 8 additions & 9 deletions docs/webapp/third-party-tools/galaxy.rst
Original file line number Diff line number Diff line change
Expand Up @@ -4,16 +4,15 @@ Galaxy
Enable Galaxy export
--------------------

Add to `web.properties` file, replacing FlyMine with your Mine name:
The following properties are set in the `global.web.properties`. You can override any of those in the `web.properties` file.

.. code-block:: properties
# in web.properties
galaxy.display = true
galaxy.disabledMessage = Galaxy export is disabled.
# in global.web.properties
galaxy.baseurl.default = https://usegalaxy.org
galaxy.url.value = /tool_runner?tool_id=flymine
galaxy.welcomeMessage = <b>Welcome to FlyMine, GALAXY users</b><br/><br/>You can run queries by clicking on the 'Templates' tab at the top of this page.&nbsp;&nbsp;You can end the query results to Galaxy from the 'EXPORT' menu in the results page.
galaxy.url.value = /tool_runner?tool_id=intermine
galaxy.welcomeMessage = <b>Welcome to InterMine, GALAXY users!</b><br/><br/>You can run queries by clicking on the 'Templates' tab at the top of this page.&nbsp;&nbsp;You can send the query results to Galaxy from the 'EXPORT' menu in the results page.
galaxy.disabledMessage = Galaxy export is disabled.
Update Struts config

Expand Down Expand Up @@ -44,7 +43,7 @@ Update Struts config
Customization
-------------

Properties located in the ''web.properties''' file.
Properties located in the ''global.web.properties''' file.

=============== ================================================ =========
parameter purpose required?
Expand All @@ -63,8 +62,8 @@ welcomeMessage displays on the homepage when coming from Galaxy yes
galaxy.display = true
galaxy.disabledMessage = Galaxy export is disabled.
galaxy.baseurl.default = https://usegalaxy.org
galaxy.url.value = /tool_runner?tool_id=flymine
galaxy.welcomeMessage = <b>Welcome to FlyMine, GALAXY users</b><br/><br/>You can run queries by \
galaxy.url.value = /tool_runner?tool_id=intermine
galaxy.welcomeMessage = <b>Welcome to InterMine, GALAXY users</b><br/><br/>You can run queries by \
clicking on the 'Templates' tab at the top of this page.&nbsp;&nbsp;You can send the query results \
to Galaxy from the 'EXPORT' menu in the results page.
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