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Update jbrowse.rst
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Julie Sullivan committed Jan 14, 2015
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6 changes: 3 additions & 3 deletions docs/webapp/third-party-tools/jbrowse.rst
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Expand Up @@ -19,7 +19,7 @@ Add this to the `<post-processing>` section of your project XML file and then bu
<post-process name="populate-child-features"/>
See :doc:`/database/database-building/post-processing/index` for details on post-processing.
See :doc:`/database/database-building/post-processing/index` for details.

Install JBrowse
~~~~~~~~~~~~~~~~~~~~
Expand All @@ -39,7 +39,7 @@ Add JBrowse to your report pages by adding this entry to your `webconfig-model.x
placement="Genomics"
types="SequenceFeature"/>
See :doc:`/webapp/report-page/report-displayers-examples/index`_ for more information.
See :doc:`/webapp/report-page/report-displayers-examples/index` for more information.

Add the location of your JBrowse installation to your `web.properties` file, for example:

Expand All @@ -53,7 +53,7 @@ Point JBrowse at your InterMine

Add your new mine-based dataset to your configuration file. For example to add *D. melanogaster* data from FlyMine_ as a JBrowse dataset, the following configuration in `jbrowse_conf.json` would suffice:

.. include::jbrowse_conf.json
.. include::/webapp/third-party-tools/jbrowse_conf.json
:code: json
Once in place, you can visit your JBrowse `index.html` and see the data from FlyMine_.
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