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added snd to galaxy img
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danielabutano committed Sep 10, 2019
1 parent 8a89b30 commit f6c9b10
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9 changes: 4 additions & 5 deletions docs/webapp/third-party-tools/galaxy.rst
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Expand Up @@ -72,12 +72,11 @@ welcomeMessage displays on the homepage when coming from Galaxy yes

Export data from InterMine to Galaxy
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There are 2 options:

* starting from an InterMine instance, e.g. FlyMine, run a query, select the option Export -> Send to Galaxy and the data will be exported in the galaxy instance specified in the Galaxy Location field
* starting from Galaxy, use the NEW intermine tool to be redirected to the InterMine registry, select the InterMine instance you want to use to export the data, run the query, select the option Export -> Send to Galaxy and the data will be exported in the Galaxy instance you started from.
1. starting from an InterMine instance, e.g. FlyMine, run a query, select the option **Export** -> **Send to Galaxy** and the data will be exported in the galaxy instance specified in the *Galaxy Location field*
![alt some text](sendtogalaxy.png)
2. starting from Galaxy, use the NEW intermine tool to be redirected to the InterMine registry, select the InterMine instance you want to use to export the data, run the query, select the option **Export** -> **Send to Galaxy** and the data will be exported in the Galaxy instance you started from.


Export data from Galaxy to InterMine
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Use the NEW InterMine interchange dataset to generate an intermediate file with a tsv-based format, then click on "View InterMine at Registry" to be redirected to the InterMIne registry in order to chose the InterMine instace to export the data to.
Use the new **InterMine interchange dataset** to generate an intermediate file (tsv formatted), then click on *View InterMine at Registry* to be redirected to the InterMIne registry in order to chose the InterMine instace to export the data to.
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