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FASTA query result: CDS translation option #2015

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JoelRichardson opened this issue Feb 24, 2019 · 2 comments
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FASTA query result: CDS translation option #2015

JoelRichardson opened this issue Feb 24, 2019 · 2 comments

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@JoelRichardson
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Would it be possible to add an option that does the protein translation on a CDS sequence?
My simple minded idea is to add a simple boolean parameter, translateCds (or something)
If true, and the view path's class is CDS, then the server would do the amino acid translation before returning the sequences.

Thanks!

@julie-sullivan
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That sounds straightforward. I bet our biojava library would do this for us. (haven't looked).

@julie-sullivan julie-sullivan added this to the InterMine 4.1.0 milestone Jun 28, 2019
@julie-sullivan julie-sullivan added this to InterMine 4.1.0 (end of 2019) in Roadmap & release planning Jul 31, 2019
sergiocontrino added a commit to sergiocontrino/intermine that referenced this issue Aug 14, 2019
sergiocontrino added a commit to sergiocontrino/intermine that referenced this issue Aug 14, 2019
@sergiocontrino
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implemented without phase for the moment (can be added when we store it).
also: extension is not considered if translation is required.

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