Fixed Java JDK version to 8

ioChem-BD · Jul 8, 2021 · 930dbbe · 930dbbe
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diff --git a/codes/molcas.rst b/codes/molcas.rst
@@ -34,4 +34,4 @@ MOLCAS
    /codes/molcas/cchc-d3e24362
    /codes/molcas/atom.expansion-d3e24431
    /codes/molcas/dynamic.loprop-d3e24547
-   /codes/molcas/molcas.input-d3e42150
+   /codes/molcas/molcas.input-d3e42112
diff --git a/codes/molcas/molcas.input-d3e42150.rst → codes/molcas/molcas.input-d3e42112.rst b/codes/molcas/molcas.input-d3e42150.rst → codes/molcas/molcas.input-d3e42112.rst
@@ -1,4 +1,4 @@
-.. _molcas.input-d3e42150:
+.. _molcas.input-d3e42112:
 
 molcas.input
 ============

diff --git a/codes/quantumespresso.rst b/codes/quantumespresso.rst
@@ -20,4 +20,4 @@ QuantumEspresso
    /codes/quantumespresso/eigenvalues-d3e32898
    /codes/quantumespresso/projwfc-d3e33011
    /codes/quantumespresso/frequencies-d3e33230
-   /codes/quantumespresso/qespresso.input-d3e42412
+   /codes/quantumespresso/qespresso.input-d3e42374
diff --git a/...ntumespresso/qespresso.input-d3e42412.rst → ...ntumespresso/qespresso.input-d3e42374.rst b/...ntumespresso/qespresso.input-d3e42412.rst → ...ntumespresso/qespresso.input-d3e42374.rst
@@ -1,4 +1,4 @@
-.. _qespresso.input-d3e42412:
+.. _qespresso.input-d3e42374:
 
 qespresso.input
 ===============

diff --git a/codes/turbomole.rst b/codes/turbomole.rst
@@ -8,7 +8,7 @@ Turbomole
    /codes/turbomole/module-d3e33505
    /codes/turbomole/program.end-d3e36329
    /codes/turbomole/electrostatic.moments-d3e36356
-   /codes/turbomole/turbomole.basis-d3e38170
-   /codes/turbomole/turbomole.control-d3e38226
-   /codes/turbomole/turbomole.coord-d3e38856
-   /codes/turbomole/turbomole.energy-d3e41813
+   /codes/turbomole/turbomole.basis-d3e38132
+   /codes/turbomole/turbomole.control-d3e38188
+   /codes/turbomole/turbomole.coord-d3e38818
+   /codes/turbomole/turbomole.energy-d3e41775
diff --git a/codes/turbomole/atoms-d3e38233.rst → codes/turbomole/atoms-d3e38195.rst b/codes/turbomole/atoms-d3e38233.rst → codes/turbomole/atoms-d3e38195.rst
@@ -1,4 +1,4 @@
-.. _atoms-d3e38233:
+.. _atoms-d3e38195:
 
 atoms
 =====

diff --git a/codes/turbomole/coord-d3e38861.rst → codes/turbomole/coord-d3e38823.rst b/codes/turbomole/coord-d3e38861.rst → codes/turbomole/coord-d3e38823.rst
@@ -1,4 +1,4 @@
-.. _coord-d3e38861:
+.. _coord-d3e38823:
 
 coord
 =====

diff --git a/codes/turbomole/dispersion-d3e38552.rst → codes/turbomole/dispersion-d3e38514.rst b/codes/turbomole/dispersion-d3e38552.rst → codes/turbomole/dispersion-d3e38514.rst
@@ -1,4 +1,4 @@
-.. _dispersion-d3e38552:
+.. _dispersion-d3e38514:
 
 dispersion
 ==========

diff --git a/codes/turbomole/methods-d3e38390.rst → codes/turbomole/methods-d3e38352.rst b/codes/turbomole/methods-d3e38390.rst → codes/turbomole/methods-d3e38352.rst
@@ -1,4 +1,4 @@
-.. _methods-d3e38390:
+.. _methods-d3e38352:
 
 methods
 =======

diff --git a/codes/turbomole/normal-d3e38441.rst → codes/turbomole/normal-d3e38403.rst b/codes/turbomole/normal-d3e38441.rst → codes/turbomole/normal-d3e38403.rst
@@ -1,4 +1,4 @@
-.. _normal-d3e38441:
+.. _normal-d3e38403:
 
 normal
 ======

diff --git a/...s/turbomole/orbitals.control-d3e38747.rst → ...s/turbomole/orbitals.control-d3e38709.rst b/...s/turbomole/orbitals.control-d3e38747.rst → ...s/turbomole/orbitals.control-d3e38709.rst
@@ -4,8 +4,8 @@ orbitals.control
 .. toctree::
    :maxdepth: 5    
 
-   /codes/turbomole/restrictedorbitals-d3e38756
-   /codes/turbomole/unrestrictedorbitals-d3e38785
+   /codes/turbomole/restrictedorbitals-d3e38718
+   /codes/turbomole/unrestrictedorbitals-d3e38747
 
 ================
 

diff --git a/codes/turbomole/parameters-d3e38633.rst → codes/turbomole/parameters-d3e38595.rst b/codes/turbomole/parameters-d3e38633.rst → codes/turbomole/parameters-d3e38595.rst
@@ -1,4 +1,4 @@
-.. _parameters-d3e38633:
+.. _parameters-d3e38595:
 
 parameters
 ==========

diff --git a/...turbomole/restrictedorbitals-d3e38756.rst → ...turbomole/restrictedorbitals-d3e38718.rst b/...turbomole/restrictedorbitals-d3e38756.rst → ...turbomole/restrictedorbitals-d3e38718.rst
@@ -1,4 +1,4 @@
-.. _restrictedorbitals-d3e38756:
+.. _restrictedorbitals-d3e38718:
 
 restrictedorbitals
 ==================

diff --git a/codes/turbomole/restrictions-d3e39211.rst → codes/turbomole/restrictions-d3e39173.rst b/codes/turbomole/restrictions-d3e39211.rst → codes/turbomole/restrictions-d3e39173.rst
@@ -1,4 +1,4 @@
-.. _restrictions-d3e39211:
+.. _restrictions-d3e39173:
 
 restrictions
 ============

diff --git a/codes/turbomole/soes-d3e38574.rst → codes/turbomole/soes-d3e38536.rst b/codes/turbomole/soes-d3e38574.rst → codes/turbomole/soes-d3e38536.rst
@@ -1,4 +1,4 @@
-.. _soes-d3e38574:
+.. _soes-d3e38536:
 
 soes
 ====

diff --git a/codes/turbomole/spectrum-d3e38490.rst → codes/turbomole/spectrum-d3e38452.rst b/codes/turbomole/spectrum-d3e38490.rst → codes/turbomole/spectrum-d3e38452.rst
@@ -1,4 +1,4 @@
-.. _spectrum-d3e38490:
+.. _spectrum-d3e38452:
 
 spectrum
 ========

diff --git a/codes/turbomole/turbomole.basis-d3e38170.rst → codes/turbomole/turbomole.basis-d3e38132.rst b/codes/turbomole/turbomole.basis-d3e38170.rst → codes/turbomole/turbomole.basis-d3e38132.rst
@@ -1,4 +1,4 @@
-.. _turbomole.basis-d3e38170:
+.. _turbomole.basis-d3e38132:
 
 turbomole.basis
 ===============

diff --git a/.../turbomole/turbomole.control-d3e38226.rst → .../turbomole/turbomole.control-d3e38188.rst b/.../turbomole/turbomole.control-d3e38226.rst → .../turbomole/turbomole.control-d3e38188.rst
@@ -4,13 +4,13 @@ turbomole.control
 .. toctree::
    :maxdepth: 5  
 
-   /codes/turbomole/atoms-d3e38233
-   /codes/turbomole/methods-d3e38390
-   /codes/turbomole/vibrations-d3e38434
-   /codes/turbomole/dispersion-d3e38552
-   /codes/turbomole/soes-d3e38574
-   /codes/turbomole/parameters-d3e38633
-   /codes/turbomole/orbitals.control-d3e38747
+   /codes/turbomole/atoms-d3e38195
+   /codes/turbomole/methods-d3e38352
+   /codes/turbomole/vibrations-d3e38396
+   /codes/turbomole/dispersion-d3e38514
+   /codes/turbomole/soes-d3e38536
+   /codes/turbomole/parameters-d3e38595
+   /codes/turbomole/orbitals.control-d3e38709
 
 =================
 

diff --git a/codes/turbomole/turbomole.coord-d3e38856.rst → codes/turbomole/turbomole.coord-d3e38818.rst b/codes/turbomole/turbomole.coord-d3e38856.rst → codes/turbomole/turbomole.coord-d3e38818.rst
@@ -4,8 +4,8 @@ turbomole.coord
 .. toctree::
    :maxdepth: 5  
 
-   /codes/turbomole/coord-d3e38861
-   /codes/turbomole/restrictions-d3e39211
+   /codes/turbomole/coord-d3e38823
+   /codes/turbomole/restrictions-d3e39173
 
 ===============
 

diff --git a/...s/turbomole/turbomole.energy-d3e41813.rst → ...s/turbomole/turbomole.energy-d3e41775.rst b/...s/turbomole/turbomole.energy-d3e41813.rst → ...s/turbomole/turbomole.energy-d3e41775.rst
@@ -1,4 +1,4 @@
-.. _turbomole.energy-d3e41813:
+.. _turbomole.energy-d3e41775:
 
 turbomole.energy
 ================

diff --git a/...rbomole/unrestrictedorbitals-d3e38785.rst → ...rbomole/unrestrictedorbitals-d3e38747.rst b/...rbomole/unrestrictedorbitals-d3e38785.rst → ...rbomole/unrestrictedorbitals-d3e38747.rst
@@ -1,4 +1,4 @@
-.. _unrestrictedorbitals-d3e38785:
+.. _unrestrictedorbitals-d3e38747:
 
 unrestrictedorbitals
 ====================

diff --git a/codes/turbomole/vibrations-d3e38434.rst → codes/turbomole/vibrations-d3e38396.rst b/codes/turbomole/vibrations-d3e38434.rst → codes/turbomole/vibrations-d3e38396.rst
@@ -4,8 +4,8 @@ vibrations
 .. toctree::
    :maxdepth: 5    
 
-   /codes/turbomole/normal-d3e38441
-   /codes/turbomole/spectrum-d3e38490
+   /codes/turbomole/normal-d3e38403
+   /codes/turbomole/spectrum-d3e38452
 
 ==========
 

diff --git a/codes/vasp.rst b/codes/vasp.rst
@@ -8,15 +8,15 @@ VASP
    /codes/vasp/incar-d3e36580
    /codes/vasp/potcar-d3e37144
    /codes/vasp/lattice-d3e37232
-   /codes/vasp/position-d3e37320
-   /codes/vasp/calculated.position-d3e37457
-   /codes/vasp/vibrations-d3e37596
-   /codes/vasp/energy-d3e37663
-   /codes/vasp/energy2-d3e37708
-   /codes/vasp/energy3-d3e37736
-   /codes/vasp/magnetization-d3e37761
-   /codes/vasp/eigenvalues-d3e37899
-   /codes/vasp/grimmes-d3e38073
-   /codes/vasp/vasp.incar-d3e41859
-   /codes/vasp/vasp.kpoints-d3e41940
-   /codes/vasp/vasp.doscar-d3e41980
+   /codes/vasp/position-d3e37272
+   /codes/vasp/calculated.position-d3e37416
+   /codes/vasp/vibrations-d3e37562
+   /codes/vasp/energy-d3e37629
+   /codes/vasp/energy2-d3e37674
+   /codes/vasp/energy3-d3e37702
+   /codes/vasp/magnetization-d3e37727
+   /codes/vasp/eigenvalues-d3e37865
+   /codes/vasp/grimmes-d3e38039
+   /codes/vasp/vasp.incar-d3e41821
+   /codes/vasp/vasp.kpoints-d3e41902
+   /codes/vasp/vasp.doscar-d3e41942
diff --git a/codes/vasp/calculated.position-d3e37457.rst → codes/vasp/calculated.position-d3e37416.rst b/codes/vasp/calculated.position-d3e37457.rst → codes/vasp/calculated.position-d3e37416.rst
@@ -1,4 +1,4 @@
-.. _calculated.position-d3e37457:
+.. _calculated.position-d3e37416:
 
 calculated.position
 ===================
@@ -32,8 +32,6 @@ calculated.position
    +-----------------------------------+-----------------------------------+
    | repeat                            | \*                                |
    +-----------------------------------+-----------------------------------+
-   | keep                              | last                              |
-   +-----------------------------------+-----------------------------------+
    | xml:base                          | position/calculated.position.xml  |
    +-----------------------------------+-----------------------------------+
 
@@ -167,6 +165,9 @@ calculated.position
    <transform process="addAttribute" xpath=".//cml:atom" name="z3" value="$string(preceding-sibling::cml:scalar[@dictRef='cc:z3'])" />
    <transform process="move" xpath=".//cml:atom" to="." />
    <transform process="delete" xpath=".//cml:list" />
+   <transform process="createMoleculeVasp" xpath="." incar="//cml:module[@cmlx:templateRef='incar']" potcar="//cml:module[@cmlx:templateRef='potcar']" lattice="./preceding::cml:module[@cmlx:templateRef='lattice']" id="calculated.position" />
+   <transform process="addAttribute" xpath="//cml:molecule[@id='calculated.position']" name="id" value="$string(concat('calculation.position.', count(./preceding::cml:molecule)))" />
+   <transform process="delete" xpath="./preceding::cml:module[@cmlx:templateRef='lattice']" />
 
 .. |image0| image:: ../../imgs/Total.png
 .. |image1| image:: ../../imgs/Partial.png
diff --git a/codes/vasp/eigenvalues-d3e37899.rst → codes/vasp/eigenvalues-d3e37865.rst b/codes/vasp/eigenvalues-d3e37899.rst → codes/vasp/eigenvalues-d3e37865.rst
@@ -4,8 +4,8 @@ eigenvalues
 .. toctree::
    :maxdepth: 5  
 
-   /codes/vasp/spin-d3e37907
-   /codes/vasp/nospin-d3e37968
+   /codes/vasp/spin-d3e37873
+   /codes/vasp/nospin-d3e37934
 
 ===========
 

diff --git a/codes/vasp/energy-d3e37663.rst → codes/vasp/energy-d3e37629.rst b/codes/vasp/energy-d3e37663.rst → codes/vasp/energy-d3e37629.rst
@@ -1,4 +1,4 @@
-.. _energy-d3e37663:
+.. _energy-d3e37629:
 
 energy
 ======

diff --git a/codes/vasp/energy2-d3e37708.rst → codes/vasp/energy2-d3e37674.rst b/codes/vasp/energy2-d3e37708.rst → codes/vasp/energy2-d3e37674.rst
@@ -1,4 +1,4 @@
-.. _energy2-d3e37708:
+.. _energy2-d3e37674:
 
 energy2
 =======

diff --git a/codes/vasp/energy3-d3e37736.rst → codes/vasp/energy3-d3e37702.rst b/codes/vasp/energy3-d3e37736.rst → codes/vasp/energy3-d3e37702.rst
@@ -1,4 +1,4 @@
-.. _energy3-d3e37736:
+.. _energy3-d3e37702:
 
 energy3
 =======

diff --git a/codes/vasp/grimmes-d3e38073.rst → codes/vasp/grimmes-d3e38039.rst b/codes/vasp/grimmes-d3e38073.rst → codes/vasp/grimmes-d3e38039.rst
@@ -1,4 +1,4 @@
-.. _grimmes-d3e38073:
+.. _grimmes-d3e38039:
 
 grimmes
 =======

diff --git a/codes/vasp/lattice-d3e37232.rst b/codes/vasp/lattice-d3e37232.rst
@@ -27,9 +27,11 @@ lattice
    | pattern                           | \\s*direct\slattice\svectors\     |
    |                                   | s*reciprocal\slattice\svectors.\* |
    +-----------------------------------+-----------------------------------+
-   | endPattern                        | \\s*\w+.*$\s\*                    |
+   | endPattern                        | \\s\*                             |
    +-----------------------------------+-----------------------------------+
-   | endOffset                         | 1                                 |
+   | endPattern2                       | ~                                 |
+   +-----------------------------------+-----------------------------------+
+   | endOffset                         | 0                                 |
    +-----------------------------------+-----------------------------------+
    | repeat                            | \*                                |
    +-----------------------------------+-----------------------------------+
@@ -66,7 +68,7 @@ lattice
    <templateList>  <template pattern="\s*direct\slattice\svectors\s*reciprocal\slattice\svectors.*" endPattern="~">    <record repeat="1" />    <record>{3F,cc:lattice}.*</record>    <record>{3F,cc:lattice}.*</record>    <record>{3F,cc:lattice}.*</record>    <transform process="pullup" xpath=".//cml:array" repeat="2" />                               
            </template>   
        </templateList>
-   <transform process="delete" xpath="./cml:module" />
+   <transform process="delete" xpath=".//cml:module" />
 
 .. |image0| image:: ../../imgs/Total.png
 .. |image1| image:: ../../imgs/Total.png
diff --git a/codes/vasp/magnetization-d3e37761.rst → codes/vasp/magnetization-d3e37727.rst b/codes/vasp/magnetization-d3e37761.rst → codes/vasp/magnetization-d3e37727.rst
@@ -1,4 +1,4 @@
-.. _magnetization-d3e37761:
+.. _magnetization-d3e37727:
 
 magnetization
 =============

diff --git a/codes/vasp/nospin-d3e37968.rst → codes/vasp/nospin-d3e37934.rst b/codes/vasp/nospin-d3e37968.rst → codes/vasp/nospin-d3e37934.rst
@@ -1,4 +1,4 @@
-.. _nospin-d3e37968:
+.. _nospin-d3e37934:
 
 nospin
 ======

diff --git a/codes/vasp/position-d3e37320.rst → codes/vasp/position-d3e37272.rst b/codes/vasp/position-d3e37320.rst → codes/vasp/position-d3e37272.rst
@@ -1,4 +1,4 @@
-.. _position-d3e37320:
+.. _position-d3e37272:
 
 position
 ========
@@ -161,6 +161,8 @@ position
    <transform process="addAttribute" xpath=".//cml:atom" name="zFract" value="$string(preceding-sibling::cml:scalar[@dictRef='cc:zFract'])" />
    <transform process="move" xpath=".//cml:atom" to="." />
    <transform process="delete" xpath=".//cml:list" />
+   <transform process="createMoleculeVasp" xpath="." incar="//cml:module[@cmlx:templateRef='incar']" potcar="//cml:module[@cmlx:templateRef='potcar']" lattice="./preceding::cml:module[@cmlx:templateRef='lattice']" id="initial" />
+   <transform process="delete" xpath="./preceding::cml:module[@cmlx:templateRef='lattice']" />
 
 .. |image0| image:: ../../imgs/Total.png
 .. |image1| image:: ../../imgs/Total.png
diff --git a/codes/vasp/spin-d3e37907.rst → codes/vasp/spin-d3e37873.rst b/codes/vasp/spin-d3e37907.rst → codes/vasp/spin-d3e37873.rst
@@ -1,4 +1,4 @@
-.. _spin-d3e37907:
+.. _spin-d3e37873:
 
 spin
 ====

diff --git a/codes/vasp/vasp.doscar-d3e41980.rst → codes/vasp/vasp.doscar-d3e41942.rst b/codes/vasp/vasp.doscar-d3e41980.rst → codes/vasp/vasp.doscar-d3e41942.rst
@@ -1,4 +1,4 @@
-.. _vasp.doscar-d3e41980:
+.. _vasp.doscar-d3e41942:
 
 vasp.doscar
 ===========

diff --git a/codes/vasp/vasp.incar-d3e41859.rst → codes/vasp/vasp.incar-d3e41821.rst b/codes/vasp/vasp.incar-d3e41859.rst → codes/vasp/vasp.incar-d3e41821.rst
@@ -1,4 +1,4 @@
-.. _vasp.incar-d3e41859:
+.. _vasp.incar-d3e41821:
 
 vasp.incar
 ==========

diff --git a/codes/vasp/vasp.kpoints-d3e41940.rst → codes/vasp/vasp.kpoints-d3e41902.rst b/codes/vasp/vasp.kpoints-d3e41940.rst → codes/vasp/vasp.kpoints-d3e41902.rst
@@ -1,4 +1,4 @@
-.. _vasp.kpoints-d3e41940:
+.. _vasp.kpoints-d3e41902:
 
 vasp.kpoints
 ============

diff --git a/codes/vasp/vibrations-d3e37596.rst → codes/vasp/vibrations-d3e37562.rst b/codes/vasp/vibrations-d3e37596.rst → codes/vasp/vibrations-d3e37562.rst
@@ -1,4 +1,4 @@
-.. _vibrations-d3e37596:
+.. _vibrations-d3e37562:
 
 vibrations
 ==========

diff --git a/guides/installation/system-requirements.rst b/guides/installation/system-requirements.rst
@@ -14,7 +14,7 @@ Software requirements
 ---------------------
 
   -  Linux OS 2.6.24 or greater (64 bit)(Tested on Centos / Fedora / Debian)
-  -  Java JDK 8+   
+  -  Java JDK 8 (greater versions are not supported)   
   -  PostgreSQL 9.1+ database server
   -  gcc package, used to compile INCHI libraries ( *yum install gcc* / *apt-get install gcc*),
 
diff --git a/html/from.rst b/html/from.rst
@@ -231,10 +231,10 @@ Lattice replication
 .. _laticce: #lattice
 .. _calculated.position: #calculated.position
 .. _basis used: #atom.potcar
-.. _KPOINTS file: ../codes/from/vasp.kpoints-d3e41940.html
+.. _KPOINTS file: ../codes/from/vasp.kpoints-d3e41902.html
 .. _energy: #energy
 .. _eigenvalues: #eigenvalues
-.. _vasp.doscar: ../codes/from/vasp.doscar-d3e41980.html
+.. _vasp.doscar: ../codes/from/vasp.doscar-d3e41942.html
 .. _magnetization: #magnetization
 .. _vibrations: #vibrations
 

diff --git a/html/quantumespresso.rst b/html/quantumespresso.rst
@@ -232,8 +232,8 @@ Data source: <module cmlx:templateRef='`frequencies`_'>
 .. _environ: ../codes/quantumespresso/environ-d3e32419.html
 .. _`cc:parameter`: ../codes/quantumespresso/environ-d3e32419.html
 .. _parameters: ../codes/quantumespresso/parameters-d3e31641.html
-.. _atoms: ../codes/quantumespresso/qespresso.input-d3e42412.html
-.. _species: ../codes/quantumespresso/qespresso.input-d3e42412.html
+.. _atoms: ../codes/quantumespresso/qespresso.input-d3e42374.html
+.. _species: ../codes/quantumespresso/qespresso.input-d3e42374.html
 .. _lattice: ../codes/quantumespresso/lattice-d3e31822.html
 .. _axes: ../codes/quantumespresso/axes-d3e31931.html
 .. _ldau: ../codes/quantumespresso/ldau-d3e32709.html

diff --git a/html/turbomole.rst b/html/turbomole.rst
@@ -269,25 +269,25 @@ Data source: <module cmlx:templateRef='`excitation`_'>
                               
 
 .. _`cc:program`: ../codes/turbomole/program-d3e33281.html
-.. _coord file: ../codes/turbomole/turbomole.coord-d3e38856.html
+.. _coord file: ../codes/turbomole/turbomole.coord-d3e38818.html
 .. _atomcoord: ../codes/turbomole/atomcoord-d3e33571.html
 .. _basis used: ../codes/turbomole/basisset-d3e34205.html
 .. _did not converge: ../codes/turbomole/convergence.info-d3e35976.html
 .. _symmetry module: ../codes/turbomole/symmetry-d3e34262.html
 .. _`t:charge`: ../codes/turbomole/electrostatic.moments-d3e35285.html
 .. _Orbital statistics module: ../codes/turbomole/molecular.orbitals.statistics-d3e35899.html
-.. _Unrestricted orbitals control file section: ../codes/turbomole/unrestrictedorbitals-d3e38785.html
-.. _restrictions: ../codes/turbomole/restrictions-d3e39211.html
+.. _Unrestricted orbitals control file section: ../codes/turbomole/unrestrictedorbitals-d3e38747.html
+.. _restrictions: ../codes/turbomole/restrictions-d3e39173.html
 .. _cosmo: ../codes/turbomole/cosmo-d3e34704.html
 .. _population.analysis: ../codes/turbomole/population.analysis-d3e33968.html
 .. _fit.pointcharges: ../codes/turbomole/fit.pointcharges-d3e36285.html
 .. _electrostatic.moments: ../codes/turbomole/electrostatic.moments-d3e35285.html
 .. _orbitals: ../codes/turbomole/orbitals-d3e34343.html
-.. _turbomole.energy: ../codes/turbomole/turbomole.energy-d3e41813.html
+.. _turbomole.energy: ../codes/turbomole/turbomole.energy-d3e41775.html
 .. _energy: ../codes/turbomole/energy-d3e36160.html
 .. _nuclear.repulsion: ../codes/turbomole/nuclear.repulsion-d3e36128.html
 .. _zero.point.energy: ../codes/turbomole/zero.point.energy-d3e36257.html
-.. _vibrations: ../codes/turbomole/vibrations-d3e38434.html
+.. _vibrations: ../codes/turbomole/vibrations-d3e38396.html
 .. _excitation: ../codes/turbomole/excitation-d3e34420.html
 
 .. |image0| image:: /imgs/TURBOMOLE_header.png