Error in setup_r5(data_path, verbose = FALSE) : java.lang.IndexOutOfBoundsException: Index -1 out of bounds for length 3447965

[Planetizan]

When creating network from open street map file for Florida and southern region of USA, following error shows up:

Error in setup_r5(data_path, verbose = FALSE) :
java.lang.IndexOutOfBoundsException: Index -1 out of bounds for length 3447965

Could you please help how to solve this? Is this error caused by faulty open street map file.

Thank you!

[mvpsaraiva]

Hi @Planetizan.

I've got the same error here with the southern US osm.pbf file.This seems to be the same as issue #141, which apparently is caused by an upstream bug in R5. You can use the workaround of this comment and use osmconvert to remove turn restrictions from the OSM network. After I did this, I've managed to create the network with setup_r5().

Please let us know if it works.

[Planetizan]

Thank you for the response. I have trouble using osmconvert. I downloaded the osmconvert64-0.8.8p.exe file and placed it in my .osm files. I opened osmconvert application and gave my file name. It gave me particular options and I chose option 5 that did drop author. For drop relations, I wrote a script replacing --drop-author with --drop-relations and pressed enter. But the application closed and did not provide any output. Could you please help me how to use this application? I am a novice and don't have much knowledge in script writing in cmd prompt. [cid:89f76f5a-f7a7-40c8-b8af-4e78bdcf9458] Thanks!

…

--Sanju

________________________________ From: Marcus Saraiva ***@***.***> Sent: Friday, August 6, 2021 11:17 AM To: ipeaGIT/r5r ***@***.***> Cc: Maharjan, Sanju ***@***.***>; Mention ***@***.***> Subject: Re: [ipeaGIT/r5r] Error in setup_r5(data_path, verbose = FALSE) : java.lang.IndexOutOfBoundsException: Index -1 out of bounds for length 3447965 (#191) Hi @Planetizan<https://secure-web.cisco.com/1NeN59YtXwodoIBqYFIzlmcT4qjXZrBH5ngkmpAbbVqETWO5zIvB8fbhCa0rG087Uf40LrO56VnxPYtDSxF90eOAdFvp80TOyZVJAeZuzfQoys4rIjwdIySbkEM0CiDsH90Cc5KQ8LkpJUci31b9vwu_nsAyaurNKVHv4O6a2NLVb8zpTcs_HmNv5bgYzN3i1UezK50fmmXIhiWG5taU1wItDOsK2bkLAXOiTSPBVH5TEwWqcjveV8X85WVyMddGlzboNgIVdjEQH9m71BZtxUuhhdVqu5b2GwK4r3wTtLjhMNuju4vxonvOW1mZTha99/https%3A%2F%2Fgithub.com%2FPlanetizan>. I've got the same error here with the southern US osm.pbf file.This seems to be the same as issue #141<https://secure-web.cisco.com/13QBJyb2MwA93VdIsTmJ4SZjH_P96WZ3jGg9mjnP_FOLpTN9igk56DZzRcsHPDnEnbpuZoUekbppOCra6ddsgl-k_RcsEvRSy5nv54T_-rgsA6eGnEC9mZwUeybIt7yigcyt4EUm1cb06xDt-uUg431-Y9UroK-HExHV1vTl2iRraYS_NcuwWhWkua8VC0-di0vcoDMHqqor9rYgTyLM-rV9DKW1DGMoLrWw0ZnL2nSnqCtnY32KwKHbjlUJo5_2X1k6PGneO7Vz6cSp9o-DaaXhtwqBRN2mPdwCOi-h4jjkhHFHALvty7lmoFMTzXngi/https%3A%2F%2Fgithub.com%2FipeaGIT%2Fr5r%2Fissues%2F141>, which apparently is caused by an upstream bug in R5. You can use the workaround of this comment<https://secure-web.cisco.com/1I1kYuZzTkr1DYuW-ods09OmWV6Kb239h7xzV6WA5TNoyxCajED_T4dPTFzqQpUTvHE8oBLf6vcpU0rgE8vopHTU2rBDvKwgyBlDB-vd0-VgTLCbCnEf2fql73p4UwZtT0c1jnkTdqZYSfZuGFH5_9kaUYyvSm3F4w_Cl9Lq2-WbPlLPVF5TeHOFmvD0sRPfIGJGV4o8dcvcaP2l6tE6vlrJx1T8gUY71WzIrzYJ9P_nJnHUkFEXYdml5epJIfYYms8TWcWEPylLR8YjL7P488MS4qneyLpWdrKWpbLFXSbaH3PPsgDGqVnyP7gdTKXCk/https%3A%2F%2Fgithub.com%2FipeaGIT%2Fr5r%2Fissues%2F141%23issuecomment-767648579> and use osmconvert<https://secure-web.cisco.com/1EbGP0PoafoWOo5MttN7eW5Q7qbRNx0mWoJ7060ho5czaCk7BqYtcyKXzJGGdgC44G2N7SE4QanSZOYiWeaH0Tc3ivTNYPpDteJ2LJGgjMJC-0-cTygJKWSSG0OM1ZUCjJEfTunbLTa31dTkZ43qSUmd05ubtAapa5o4ukcZU8fIF9pHcgNbk_uTnWzhItJ3K_G0sdtnzgpkgjJaMG2w3EagYz_I0pcWV91l4oPDe_Q_Bi7Tci9CIo-HpeKtrFhs5_eWmOrJU4b6WKuNn5KSAhuVF7BvLbZSS50NbxiV4CZo4DU6RuY2mUgEdO3N0juA7/https%3A%2F%2Fwiki.openstreetmap.org%2Fwiki%2FOsmconvert> to remove turn restrictions from the OSM network. After I did this, I've managed to create the network with setup_r5(). Please let us know if it works. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<https://secure-web.cisco.com/155EaSYq7GIAO4W86x3bdHKp5lQaYySwdfD9Tlwov9TKvI9fODDXBbKCwhH4aYfwbJtIWw29Duj-vhU3JkUTpcl_5a8Q-ISDK3pZgtFr7YgOahP2wetj-wviiBwDoGM2NOjjVcDII06tMDPvesB4sTrgAPxeBC1LO-j_W4tLo-V7bOM1ag_AY9CkIEKHGVBjHkJEPzImMvJF-_WfCnGy9_aYbRpLrXJII6Zfm826dyO-R6b6nVG-_wrZydCXv2MOzJvXY05iwLgIoyf_sv1AiUp9J3fgxB9GWOwPj-Bfq_HSlUeH1QcWq3DRzFZSREUWy/https%3A%2F%2Fgithub.com%2FipeaGIT%2Fr5r%2Fissues%2F191%23issuecomment-894368334>, or unsubscribe<https://secure-web.cisco.com/1t2ki5uhHR6KIIcpHnrbyq4cRlSYh-C0eBvgKTS18oEf3nIRou2zL9_jrUqNwKq5Kq5gPgdBaKAxiackv4T2v23IW_2qHvCOqsXt_7LxyxzlXwZV6DjCGch5a5wL7rCeu_b2M2wuF7ACX3jy-R11qt0kITdIE68Yjp5LPjvL7-xgAEEDN3VxKwbSs62nykYuVMcGnqmfjgrQLaIv_M476m-VPuak8lnQ19ynrwzT5XlguFkCDbBqoC8QJUolvU0lBeif5CnWPQY3H9BGO23eTCh9QNBErtmNJQilbX2_QqrAYDQCbBW9N4VLsxgPCYUnA/https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAVC4MMCRVFARYGV7LICY4GDT3QDJRANCNFSM5BVVEPKQ>. Triage notifications on the go with GitHub Mobile for iOS<https://secure-web.cisco.com/1VyNh4ToslkvP4P70rqukca7f1NJSYL8iE_aY03UK587AyJiFclL22LwQ1l9NpeWhKbdM9Wbvq6w1RjEZ7Ydyd2nIxqAI9-SkmrI6ElnlNO_ysys2ic4ZQ2EoBRTq0nxHDh_Tb_fNMgY1N4issuAWzA4LoxEtplWOrGyBxnsaSDUG6JUTfsChFaD9ImXnDYJ21dG2_grXdIS6te8Roi3xKY3w1ZaH2yzlBd5NZnOAwq8u-NRPR90T_2FbJvW4g9aozewfqihxDVPZrmqxLBMtAf9ZsqBDd8wLReb8zDMWLg5Ht1bdyxj8i3V-1QubYY7X/https%3A%2F%2Fapps.apple.com%2Fapp%2Fapple-store%2Fid1477376905%3Fct%3Dnotification-email%26mt%3D8%26pt%3D524675> or Android<https://secure-web.cisco.com/1OZTu5CqSRY_BgamEIn3auJZfotptV3bytLU03AjGWpjCR514-38uZUmMVgx_xbp5BZZ9C6rvFGNxonoZ97LCWAIaHpJVyJHmYBPI0VrOokaSBDweaBFX4aVg1RzRZb5u-EoXYNMQVnGORqm_WjTKD2m4F6k1xuhU6cz78eg-kyWsIyxmU_Gq2oHLkJomWKVrfTMTpkg4KHhZ0hKUJFM4IbtUS9h5_zbsQSnUGyPTI2qqgYCD752gB9p2UXNFLQotna4kbYTWuB_b0qXcr_Ahi0376gEzyQ9YTiQXvwM_LaFUDYVlBdufY9vsOSXxZvfT/https%3A%2F%2Fplay.google.com%2Fstore%2Fapps%2Fdetails%3Fid%3Dcom.github.android%26utm_campaign%3Dnotification-email>.

[Planetizan]

Dear Sir, I got the output from drop relations. It took some time. Thank you very much for your help.

…

--Sanju

________________________________ From: Maharjan, Sanju ***@***.***> Sent: Friday, August 6, 2021 12:07 PM To: ipeaGIT/r5r ***@***.***> Subject: Re: [ipeaGIT/r5r] Error in setup_r5(data_path, verbose = FALSE) : java.lang.IndexOutOfBoundsException: Index -1 out of bounds for length 3447965 (#191) Thank you for the response. I have trouble using osmconvert. I downloaded the osmconvert64-0.8.8p.exe file and placed it in my .osm files. I opened osmconvert application and gave my file name. It gave me particular options and I chose option 5 that did drop author. For drop relations, I wrote a script replacing --drop-author with --drop-relations and pressed enter. But the application closed and did not provide any output. Could you please help me how to use this application? I am a novice and don't have much knowledge in script writing in cmd prompt. [cid:89f76f5a-f7a7-40c8-b8af-4e78bdcf9458] Thanks!

--Sanju

________________________________ From: Marcus Saraiva ***@***.***> Sent: Friday, August 6, 2021 11:17 AM To: ipeaGIT/r5r ***@***.***> Cc: Maharjan, Sanju ***@***.***>; Mention ***@***.***> Subject: Re: [ipeaGIT/r5r] Error in setup_r5(data_path, verbose = FALSE) : java.lang.IndexOutOfBoundsException: Index -1 out of bounds for length 3447965 (#191) Hi @Planetizan<https://secure-web.cisco.com/1NeN59YtXwodoIBqYFIzlmcT4qjXZrBH5ngkmpAbbVqETWO5zIvB8fbhCa0rG087Uf40LrO56VnxPYtDSxF90eOAdFvp80TOyZVJAeZuzfQoys4rIjwdIySbkEM0CiDsH90Cc5KQ8LkpJUci31b9vwu_nsAyaurNKVHv4O6a2NLVb8zpTcs_HmNv5bgYzN3i1UezK50fmmXIhiWG5taU1wItDOsK2bkLAXOiTSPBVH5TEwWqcjveV8X85WVyMddGlzboNgIVdjEQH9m71BZtxUuhhdVqu5b2GwK4r3wTtLjhMNuju4vxonvOW1mZTha99/https%3A%2F%2Fgithub.com%2FPlanetizan>. I've got the same error here with the southern US osm.pbf file.This seems to be the same as issue #141<https://secure-web.cisco.com/13QBJyb2MwA93VdIsTmJ4SZjH_P96WZ3jGg9mjnP_FOLpTN9igk56DZzRcsHPDnEnbpuZoUekbppOCra6ddsgl-k_RcsEvRSy5nv54T_-rgsA6eGnEC9mZwUeybIt7yigcyt4EUm1cb06xDt-uUg431-Y9UroK-HExHV1vTl2iRraYS_NcuwWhWkua8VC0-di0vcoDMHqqor9rYgTyLM-rV9DKW1DGMoLrWw0ZnL2nSnqCtnY32KwKHbjlUJo5_2X1k6PGneO7Vz6cSp9o-DaaXhtwqBRN2mPdwCOi-h4jjkhHFHALvty7lmoFMTzXngi/https%3A%2F%2Fgithub.com%2FipeaGIT%2Fr5r%2Fissues%2F141>, which apparently is caused by an upstream bug in R5. You can use the workaround of this comment<https://secure-web.cisco.com/1I1kYuZzTkr1DYuW-ods09OmWV6Kb239h7xzV6WA5TNoyxCajED_T4dPTFzqQpUTvHE8oBLf6vcpU0rgE8vopHTU2rBDvKwgyBlDB-vd0-VgTLCbCnEf2fql73p4UwZtT0c1jnkTdqZYSfZuGFH5_9kaUYyvSm3F4w_Cl9Lq2-WbPlLPVF5TeHOFmvD0sRPfIGJGV4o8dcvcaP2l6tE6vlrJx1T8gUY71WzIrzYJ9P_nJnHUkFEXYdml5epJIfYYms8TWcWEPylLR8YjL7P488MS4qneyLpWdrKWpbLFXSbaH3PPsgDGqVnyP7gdTKXCk/https%3A%2F%2Fgithub.com%2FipeaGIT%2Fr5r%2Fissues%2F141%23issuecomment-767648579> and use osmconvert<https://secure-web.cisco.com/1EbGP0PoafoWOo5MttN7eW5Q7qbRNx0mWoJ7060ho5czaCk7BqYtcyKXzJGGdgC44G2N7SE4QanSZOYiWeaH0Tc3ivTNYPpDteJ2LJGgjMJC-0-cTygJKWSSG0OM1ZUCjJEfTunbLTa31dTkZ43qSUmd05ubtAapa5o4ukcZU8fIF9pHcgNbk_uTnWzhItJ3K_G0sdtnzgpkgjJaMG2w3EagYz_I0pcWV91l4oPDe_Q_Bi7Tci9CIo-HpeKtrFhs5_eWmOrJU4b6WKuNn5KSAhuVF7BvLbZSS50NbxiV4CZo4DU6RuY2mUgEdO3N0juA7/https%3A%2F%2Fwiki.openstreetmap.org%2Fwiki%2FOsmconvert> to remove turn restrictions from the OSM network. After I did this, I've managed to create the network with setup_r5(). Please let us know if it works. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<https://secure-web.cisco.com/155EaSYq7GIAO4W86x3bdHKp5lQaYySwdfD9Tlwov9TKvI9fODDXBbKCwhH4aYfwbJtIWw29Duj-vhU3JkUTpcl_5a8Q-ISDK3pZgtFr7YgOahP2wetj-wviiBwDoGM2NOjjVcDII06tMDPvesB4sTrgAPxeBC1LO-j_W4tLo-V7bOM1ag_AY9CkIEKHGVBjHkJEPzImMvJF-_WfCnGy9_aYbRpLrXJII6Zfm826dyO-R6b6nVG-_wrZydCXv2MOzJvXY05iwLgIoyf_sv1AiUp9J3fgxB9GWOwPj-Bfq_HSlUeH1QcWq3DRzFZSREUWy/https%3A%2F%2Fgithub.com%2FipeaGIT%2Fr5r%2Fissues%2F191%23issuecomment-894368334>, or unsubscribe<https://secure-web.cisco.com/1t2ki5uhHR6KIIcpHnrbyq4cRlSYh-C0eBvgKTS18oEf3nIRou2zL9_jrUqNwKq5Kq5gPgdBaKAxiackv4T2v23IW_2qHvCOqsXt_7LxyxzlXwZV6DjCGch5a5wL7rCeu_b2M2wuF7ACX3jy-R11qt0kITdIE68Yjp5LPjvL7-xgAEEDN3VxKwbSs62nykYuVMcGnqmfjgrQLaIv_M476m-VPuak8lnQ19ynrwzT5XlguFkCDbBqoC8QJUolvU0lBeif5CnWPQY3H9BGO23eTCh9QNBErtmNJQilbX2_QqrAYDQCbBW9N4VLsxgPCYUnA/https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAVC4MMCRVFARYGV7LICY4GDT3QDJRANCNFSM5BVVEPKQ>. Triage notifications on the go with GitHub Mobile for iOS<https://secure-web.cisco.com/1VyNh4ToslkvP4P70rqukca7f1NJSYL8iE_aY03UK587AyJiFclL22LwQ1l9NpeWhKbdM9Wbvq6w1RjEZ7Ydyd2nIxqAI9-SkmrI6ElnlNO_ysys2ic4ZQ2EoBRTq0nxHDh_Tb_fNMgY1N4issuAWzA4LoxEtplWOrGyBxnsaSDUG6JUTfsChFaD9ImXnDYJ21dG2_grXdIS6te8Roi3xKY3w1ZaH2yzlBd5NZnOAwq8u-NRPR90T_2FbJvW4g9aozewfqihxDVPZrmqxLBMtAf9ZsqBDd8wLReb8zDMWLg5Ht1bdyxj8i3V-1QubYY7X/https%3A%2F%2Fapps.apple.com%2Fapp%2Fapple-store%2Fid1477376905%3Fct%3Dnotification-email%26mt%3D8%26pt%3D524675> or Android<https://secure-web.cisco.com/1OZTu5CqSRY_BgamEIn3auJZfotptV3bytLU03AjGWpjCR514-38uZUmMVgx_xbp5BZZ9C6rvFGNxonoZ97LCWAIaHpJVyJHmYBPI0VrOokaSBDweaBFX4aVg1RzRZb5u-EoXYNMQVnGORqm_WjTKD2m4F6k1xuhU6cz78eg-kyWsIyxmU_Gq2oHLkJomWKVrfTMTpkg4KHhZ0hKUJFM4IbtUS9h5_zbsQSnUGyPTI2qqgYCD752gB9p2UXNFLQotna4kbYTWuB_b0qXcr_Ahi0376gEzyQ9YTiQXvwM_LaFUDYVlBdufY9vsOSXxZvfT/https%3A%2F%2Fplay.google.com%2Fstore%2Fapps%2Fdetails%3Fid%3Dcom.github.android%26utm_campaign%3Dnotification-email>.

[mvpsaraiva]

For drop relations, I wrote a script replacing --drop-author with --drop-relations and pressed enter.

That's exactly how I did it. It really takes a while to process, because the input file is quite large. setup_r5 should take a while as well, just remember to allocate enough memory for Java, by using something like options(java.parameters = "-Xmx16G") at the beginning of your script.

[Planetizan]

When you press enter, does the application closes? For me the app closed and no output was generated. Previously, I thought output was generated but it did not. Thanks!

…

--Sanju

________________________________ From: Marcus Saraiva ***@***.***> Sent: Friday, August 6, 2021 12:18 PM To: ipeaGIT/r5r ***@***.***> Cc: Maharjan, Sanju ***@***.***>; Mention ***@***.***> Subject: Re: [ipeaGIT/r5r] Error in setup_r5(data_path, verbose = FALSE) : java.lang.IndexOutOfBoundsException: Index -1 out of bounds for length 3447965 (#191) For drop relations, I wrote a script replacing --drop-author with --drop-relations and pressed enter. That's exactly how I did it. It really takes a while to process, because the input file is quite large. setup_r5 should take a while as well, just remember to allocate enough memory for Java, by using something like options(java.parameters = "-Xmx16G") at the beginning of your script. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<https://secure-web.cisco.com/1SxXdgRAKqnimoHshd3QkOBOHddxNP7Kmnz30tCkBcMtNFEAtc-5SCpJa3IPG2RA7KhJaVG7DAnEMb29UPVTvVe_mwT0zgCruli9cqrv8cFeFX_OSHSyB2LaRRGV47I--676_lyv0-EvjipdaFg9-FSu6laJvBjj7I6P54UvNL1QYY-GNw7u2sJOI0YfvYHR4oYxGNtW_HHhHKYhFnpEWRMhYr9wdmDD5JqByqRMoiBvcWFxkQN1Q5Rd6KilvnUgQte5uXp8yIoSSCDrtjlWFVlkwTw9zAPTGfCThTL_xVXqVqRPAOQox__MRUn3QfUwj/https%3A%2F%2Fgithub.com%2FipeaGIT%2Fr5r%2Fissues%2F191%23issuecomment-894401878>, or unsubscribe<https://secure-web.cisco.com/1XSmj7rX8d4NWUDiKbblmPAnk3a0WK1HCXeACPV5syYcMt-NrbUhN70--xYJMDeYkSlm1DaP2LOKYfSzJGivH2Tv1B7CUjd69bu6VzoAcCeEAeLaYcLBb3UTE06-B0X4MKlHRKHYBUy7J1t3y0r2pWv8zdB5ohx5uJVhgpa1T1xV-8cfAEve7mQLrHXTYg1tiJIXCA5l82S8ODvAvFXHXem5F5gLx_zXbsQIivUq-aCXG-sPpzeYkpWq80Z9I42hnmuCl9V5p1f9vMhcfTvs_UPJJ21W9m4e2licmIYi3QoTpmio6IbltlS5dMgNnVYbv/https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAVC4MMEK55YEKBX6JDAA35TT3QKNLANCNFSM5BVVEPKQ>. Triage notifications on the go with GitHub Mobile for iOS<https://secure-web.cisco.com/1c-jOqCulg4R2FpYBTg7JXwWD26kJinW6Kn3wNIp9U5s5ZoeBDdhQSpz_5IV87T07lHMCl9Eg8O3mNQ_xXLyCAdFtL80mJOLQZ96ii9IKe0Rp9BwGXvin6BT2-qMbu5RG_3lc2uF8Ic1NfQ65PGpnkR-s1Zh1lULSl-ANeDS07akY0dQb2pPfHoN-mLKxrrGggcUbJjPO-Poi8zB6Fta2nNnsBCw6E4sT60GYkRoM3hlol8_NBkpYCJVDrSCD-6wnSgHxjFyDcod0jruR5HLDJtRwrG7giSD4BgfST8d9WsPiu_W9URrbhYdBTA_1l4-3/https%3A%2F%2Fapps.apple.com%2Fapp%2Fapple-store%2Fid1477376905%3Fct%3Dnotification-email%26mt%3D8%26pt%3D524675> or Android<https://secure-web.cisco.com/1G9dhlxK8xBzzNT551SrT9Eqmnyjis7n76gT8LnVG1Xw7OUFjAvW2k4gPt2vlbpW_rojOo2JF0FDDqBEF39XTL0BFMfRKeMMLxjDIoVJ6jFM4fKEB-Dwulyd94Bp5PP_IARg-93QuVmU8cRw6nC1-CFXJ9md1SEEvjS0574v-MZ90SIbjKcGv6OMmZFa3L1EG00bgqVHKW4xbjAiUTohKIthxweFfE3vcMibF4jNto_g9NGdE5nEJNmfrIxGPQADT1skJuRbA8H_veON5wNI6OD7tT1XCLGerMQTIpFnQ7kb2hp0aI9sOJzkgvK00Mmqi/https%3A%2F%2Fplay.google.com%2Fstore%2Fapps%2Fdetails%3Fid%3Dcom.github.android%26utm_campaign%3Dnotification-email>.

[mvpsaraiva]

I've did it in macOS, and the app didn't close. The terminal console was stuck during the entire process, and then it finished without any hint.

[mvpsaraiva]

Hi @Planetizan. Did using osmconvert solve your problems? Can we close this issue?

[mvpsaraiva]

I'm closing this issue for now. @Planetizan, please feel free to reopen it if you need further help.