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update documentation
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irusri committed Oct 22, 2019
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2 changes: 1 addition & 1 deletion docs/getting_started.md
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Expand Up @@ -8,7 +8,7 @@ Overview of GenIE-Sys

The Genome Integrative Explorer System (GenIE-Sys) is dedicative in-house system to facilitate external groups in setting up their own web resource for searching, visualizing, editing, sharing and reproducing their genomic and transcriptomic data while using project raw data( ```GFF3,FASTA,FASTQ ```) as an input.

**GenIE-Sys is a file-based System with basic content stored in text files. MySQL database server is required to load the genomic data and integrate with GenIE-Sys plugins.**
**GenIE-Sys has its basic content stored in text files. MySQL database server is required to load the genomic data and integrate with GenIE-Sys plugins.**

GenIE-Sys will support cutting-edge genomic science, providing easily accessible, reproducible, and shareable science. The increasingly large size of many datasets is a particularly challenging aspect of current and future genomics based research; it is often difficult to move large datasets between servers due to constraints of time and finance. It is also important to keep the experimental datasets private among the group members until the project goals are accomplished or until after publication. In other words, it must provide a high level of security to ensure that the genomic web resource remains private without requiring the moving of data to unknown remote servers. Therefore, a locally hosted GenIE-Sys installation represents a more secure, less expensive and time consuming resource to implement.

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4 changes: 2 additions & 2 deletions docs/plugins/database_design.md
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Database design
=====================

GenIE-Sys is a file-based System with basic content stored in text files. MySQL database server is required to load the genomic data and integrate with GenIE-Sys plugins.
GenIE-Sys has its basic content stored in text files. MySQL database server is required to load the genomic data and integrate with GenIE-Sys plugins.

You can create a database using a graphical user interface or command line.
## Creating a new database using GUI
Expand All @@ -16,7 +16,7 @@ Once you navigate to the Home page, you will see options to install the database
**1.) install Arabidopsis thaliana model species**

You need to type in the database name, MySQL host, username and password and then click the button "Load Data into the Database."

[![](https://github.com/irusri/geniesys/blob/master/docs/images/install_atg_db.png?raw=true)](https://raw.githubusercontent.com/irusri/geniesys/master/docs/images/install_atg_db.png)

**2.) install an empty database.**
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