AttributeError when installing via pip

[felciano]

When trying to install biopy-isatab via pip I run into an AttributeError when it tries to create the install egg. We would like to try using this package in a deployed virtual environment via pip. Can someone please take a look at this?

Thx!

C:\Dropbox\Code\isa-tab>pip install biopy-isatab
Downloading/unpacking biopy-isatab
  Downloading biopy-isatab-0.1.tar.gz
  Running setup.py egg_info for package biopy-isatab

    Traceback (most recent call last):
      File "<string>", line 14, in <module>
      File "C:\Dropbox\Code\isa-tab\build\biopy-isatab\setup.py", line 16, in <module>
        install_requires = [
      File "C:\Python27\lib\distutils\core.py", line 152, in setup
        dist.run_commands()
      File "C:\Python27\lib\distutils\dist.py", line 953, in run_commands
        self.run_command(cmd)
      File "C:\Python27\lib\distutils\dist.py", line 972, in run_command
        cmd_obj.run()
      File "<string>", line 12, in replacement_run
      File "C:\Python27\lib\site-packages\setuptools\command\egg_info.py", line 254, in find_sources
        mm.run()
      File "C:\Python27\lib\site-packages\setuptools\command\egg_info.py", line 310, in run
        self.read_template()
      File "C:\Python27\lib\site-packages\setuptools\command\sdist.py", line 209, in read_template
        sys.exc_info()[2].tb_next.tb_frame.f_locals['template'].close()
      File "C:\Python27\lib\distutils\text_file.py", line 128, in close
        self.file.close ()
    AttributeError: 'NoneType' object has no attribute 'close'
    Complete output from command python setup.py egg_info:
    running egg_info

creating pip-egg-info\biopy_isatab.egg-info

writing pip-egg-info\biopy_isatab.egg-info\PKG-INFO

writing namespace_packages to pip-egg-info\biopy_isatab.egg-info\namespace_packages.txt

writing top-level names to pip-egg-info\biopy_isatab.egg-info\top_level.txt

writing dependency_links to pip-egg-info\biopy_isatab.egg-info\dependency_links.txt

writing manifest file 'pip-egg-info\biopy_isatab.egg-info\SOURCES.txt'

warning: manifest_maker: standard file '-c' not found



reading manifest file 'pip-egg-info\biopy_isatab.egg-info\SOURCES.txt'

reading manifest template 'MANIFEST.in'

Traceback (most recent call last):

  File "<string>", line 14, in <module>

  File "C:\Dropbox\Code\isa-tab\build\biopy-isatab\setup.py", line 16, in <module>

    install_requires = [

  File "C:\Python27\lib\distutils\core.py", line 152, in setup

    dist.run_commands()

  File "C:\Python27\lib\distutils\dist.py", line 953, in run_commands

    self.run_command(cmd)

  File "C:\Python27\lib\distutils\dist.py", line 972, in run_command

    cmd_obj.run()

  File "<string>", line 12, in replacement_run

  File "C:\Python27\lib\site-packages\setuptools\command\egg_info.py", line 254, in find_sources

    mm.run()

  File "C:\Python27\lib\site-packages\setuptools\command\egg_info.py", line 310, in run

    self.read_template()

  File "C:\Python27\lib\site-packages\setuptools\command\sdist.py", line 209, in read_template

    sys.exc_info()[2].tb_next.tb_frame.f_locals['template'].close()

  File "C:\Python27\lib\distutils\text_file.py", line 128, in close

    self.file.close ()

AttributeError: 'NoneType' object has no attribute 'close'

----------------------------------------
Command python setup.py egg_info failed with error code 1
Storing complete log in C:\Users\felciano\AppData\Roaming\pip\pip.log

C:\Dropbox\Code\isa-tab>pip install biopy-isatab

[felciano]

Same error occurs with easy_install:

C:\Dropbox\Code\isa-tab>easy_install biopy-isatab
Searching for biopy-isatab
Reading http://pypi.python.org/simple/biopy-isatab/
Reading https://github.com/ISA-tools/biopy-isatab
Best match: biopy-isatab 0.1
Downloading http://pypi.python.org/packages/source/b/biopy-isatab/biopy-isatab-0.1.tar.gz#md5=15f4d074a56315787860cf28f6acdbe9
Processing biopy-isatab-0.1.tar.gz
Running biopy-isatab-0.1\setup.py -q bdist_egg --dist-dir c:\users\felciano\appdata\local\temp\easy_install-qgmdgb\biopy-isatab-0.1\egg-dist-tmp-bhtmad
Traceback (most recent call last):
  File "C:\Python27\Scripts\easy_install-script.py", line 9, in <module>
    load_entry_point('distribute==0.6.19', 'console_scripts', 'easy_install')()
  File "C:\Python27\lib\site-packages\setuptools\command\easy_install.py", line 1864, in main
    with_ei_usage(lambda:
  File "C:\Python27\lib\site-packages\setuptools\command\easy_install.py", line 1845, in with_ei_usage
    return f()
  File "C:\Python27\lib\site-packages\setuptools\command\easy_install.py", line 1868, in <lambda>
    distclass=DistributionWithoutHelpCommands, **kw
  File "C:\Python27\lib\distutils\core.py", line 152, in setup
    dist.run_commands()
  File "C:\Python27\lib\distutils\dist.py", line 953, in run_commands
    self.run_command(cmd)
  File "C:\Python27\lib\distutils\dist.py", line 972, in run_command
    cmd_obj.run()
  File "C:\Python27\lib\site-packages\setuptools\command\easy_install.py", line 345, in run
    self.easy_install(spec, not self.no_deps)
  File "C:\Python27\lib\site-packages\setuptools\command\easy_install.py", line 585, in easy_install
    return self.install_item(spec, dist.location, tmpdir, deps)
  File "C:\Python27\lib\site-packages\setuptools\command\easy_install.py", line 615, in install_item
    dists = self.install_eggs(spec, download, tmpdir)
  File "C:\Python27\lib\site-packages\setuptools\command\easy_install.py", line 805, in install_eggs
    return self.build_and_install(setup_script, setup_base)
  File "C:\Python27\lib\site-packages\setuptools\command\easy_install.py", line 1082, in build_and_install
    self.run_setup(setup_script, setup_base, args)
  File "C:\Python27\lib\site-packages\setuptools\command\easy_install.py", line 1071, in run_setup
    run_setup(setup_script, args)
  File "C:\Python27\lib\site-packages\setuptools\sandbox.py", line 30, in run_setup
    lambda: execfile(
  File "C:\Python27\lib\site-packages\setuptools\sandbox.py", line 72, in run
    return func()
  File "C:\Python27\lib\site-packages\setuptools\sandbox.py", line 32, in <lambda>
    {'__file__':setup_script, '__name__':'__main__'}
  File "setup.py", line 16, in <module>
  File "C:\Python27\lib\distutils\core.py", line 152, in setup
    dist.run_commands()
  File "C:\Python27\lib\distutils\dist.py", line 953, in run_commands
    self.run_command(cmd)
  File "C:\Python27\lib\distutils\dist.py", line 972, in run_command
    cmd_obj.run()
  File "C:\Python27\lib\site-packages\setuptools\command\bdist_egg.py", line 172, in run
    self.run_command("egg_info")
  File "C:\Python27\lib\distutils\cmd.py", line 326, in run_command
    self.distribution.run_command(command)
  File "C:\Python27\lib\distutils\dist.py", line 972, in run_command
    cmd_obj.run()
  File "C:\Python27\lib\site-packages\setuptools\command\egg_info.py", line 179, in run
    self.find_sources()
  File "C:\Python27\lib\site-packages\setuptools\command\egg_info.py", line 254, in find_sources
    mm.run()
  File "C:\Python27\lib\site-packages\setuptools\command\egg_info.py", line 310, in run
    self.read_template()
  File "C:\Python27\lib\site-packages\setuptools\command\sdist.py", line 209, in read_template
    sys.exc_info()[2].tb_next.tb_frame.f_locals['template'].close()
  File "C:\Python27\lib\distutils\text_file.py", line 128, in close
    self.file.close ()
AttributeError: 'NoneType' object has no attribute 'close'

C:\Dropbox\Code\isa-tab>

[chapmanb]

Ramon;
Can you try with version 0.1.1, just pushed to pypi? I don't have a windows machine so can't replicate here, but tried a fix based on this Stackoverflow question:

http://stackoverflow.com/questions/9136375/django-file-picker-setup-py-broken

Hopefully that fixes it for you.

[chapmanb]

Closing as fixed