Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure
This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website:
Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomi…
Plugins developed for use in the ISAcreator. They should be placed in a 'Plugins' directory in the ISAcreator build environment.
The ISAvalidator, ISA converter and BII data manager tools
ISAcreator is a Java desktop application which allows for the creation and editing of ISATab files. Originally develped by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran and Philippe Rocca-Serra (Uni. of Oxford).
The ISAconfigurator allows for creation of XML files (configuration files) used to build spreadsheets in the ISAcreator and for validation in the creator and ISAvalidation code. Led by Eamonn Maguire, Philippe Rocca-Serra (Uni. of Oxford).
Package to convert ISA-TAB files into RDF data relying on different semantic frameworks (OWL ontologies).
ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool
forked from althonos/nmrml2isa
Generate ISA-Tab studies from .nmrML files.