@ISA-tools

ISA tools

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Java 2 1

jUtils

Utility classes

Updated

ISAvalidator-ISAconverter-BIImanager

The ISAvalidator, ISA converter and BII data manager tools

Updated

Web Ontology Language 3 4

stato

The STATistics Ontology

Updated

JavaScript 11 3

OntoMaton

OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.

Updated

ISAcreator

ISAcreator is a Java desktop application which allows for creation and editing of ISATab files. Led by Eamonn Maguire, Alejandra Gonzalez-Beltran and Philippe Rocca-Serra (Uni. of Oxford).

Updated

Configuration-Files

ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool

Updated

Java 8 3

linkedISA

Package to convert ISA-TAB files into RDF data relying on different semantic frameworks (OWL ontologies).

Updated

Shell 2 3

soapdenovo2

SOAPdenovo2 case study website

Updated

Java 6 2

graph2tab

This package is a generic implementation of a method for producing spreadsheets out of pipeline graphs. It is based on the computation of the minimum flow from all the sources to all the sink nodes, having set at 1 the lower bound for all the experimental workflow arcs (and no upper bound, i.e. capacity) restrictions.

Updated

Risa

Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomi…

Updated

Python 9 1

biopy-isatab

Python parser for ISAtab, a biological file format for experimental metadata

Updated

Java 3 2

ISAcreatorPlugins

Plugins developed for use in the ISAcreator. They should be placed in a 'Plugins' directory in the ISAcreator build environment.

Updated

JavaScript 0 1

ISATab-Viewer

An ISA-Tab web viewing library written in Javascript.

Updated

isacommons-wp-theme

ISA commons wordpress theme

Updated

JavaScript 0 0

isatools-wp-theme

ISA tools wordpress theme

Updated

JavaScript 0 1

bii-webapp

New BII web-application.

Updated

DataCarpentry-TrainingMaterial

Training material produced for the Data Carpentry workshops

Updated

Java 2 0

NanoMaton

Updated

ISAconfigurator

The ISAconfigurator allows for creation of XML files (configuration files) used to build spreadsheets in the ISAcreator and for validation in the creator and ISAvalidation code. Led by Eamonn Maguire, Philippe Rocca-Serra (Uni. of Oxford).

Updated

linkedISA-ontologies

ISA ontology used as a backbone for the mappings within the linkedISA conversion

Updated