@ISA-tools

ISA tools

Pinned repositories

  1. isa-api

    ISA tools API

    Python 15 21

  2. ISAcreator

    ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran…

    Java 29 23

  3. OntoMaton

    OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.

    JavaScript 23 3

  4. Risa

    Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset,…

    R 14 9

  5. linkedISA

    Package to convert ISA-TAB files into RDF data relying on different semantic frameworks (OWL ontologies).

    Java 8 4

  6. stato

    This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website:

    Java 8 5

  • Read/write/validation packages for the ISA tools API

    Python 1 5 Updated Jul 16, 2018
  • Repository for ISA datasets, which may be available in different formats (tab, RDF, JSON)

    4 5 Updated Jul 16, 2018
  • ISA Galaxy tools, tours, and other enhancements

    JavaScript 1 GPL-3.0 Updated Jul 6, 2018
  • This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website:

    Java 8 5 Updated Jul 4, 2018
  • ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran, David Johnson and Philippe Rocca-Serra (Uni. of Oxford).

    Java 29 23 Updated Jul 2, 2018
  • jUtils, a miscellanea of small and handy general purpose utilities for Java

    Java 4 4 Updated Jun 27, 2018
  • An ISA-Tab web viewing library written in Javascript.

    JavaScript 1 1 MIT Updated Jun 27, 2018
  • Conda recipes for the bioconda channel.

    Shell 727 Updated Jun 26, 2018
  • R 1 Updated Jun 22, 2018
  • a docker container for R package reshape2 to perform cast/melt operation on data matrices

    R 1 Updated Jun 22, 2018
  • Build files for isatools/isatools image on Docker Hub

    2 Updated Jun 22, 2018
  • ISA tools API

    Python 15 21 Updated Jun 22, 2018
  • ISA tools website

    HTML Updated Jun 18, 2018
  • Metabolomics Standards Initiative Ontology

    Java 1 1 Updated Jun 15, 2018
  • Repository with exercises related to ISA

    Jupyter Notebook 1 BSD-3-Clause Updated Jun 15, 2018
  • nmrml2isa for galaxy

    HTML 1 1 Updated Jun 15, 2018
  • A lightweight web-based ISA-Tab viewer for multiple ISA-Tab files.

    JavaScript 3 BSD-3-Clause Updated Jun 13, 2018
  • ISA Model and Serialization Specifications

    HTML 1 1 Updated Jun 11, 2018
  • Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure

    Python 5 4 Updated Jun 7, 2018
  • mzml2isa for galaxy

    HTML 4 6 Updated Jun 7, 2018
  • ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool

    4 9 Updated Jun 7, 2018
  • Python 3 Updated May 22, 2018
  • JSON data package specifications for data matrices referenced from ISA metadata archive files.

    1 Updated May 8, 2018
  • Testing for the BioSharing widget

    HTML Updated May 3, 2018
  • RESTful web service to use ISA API

    Python 2 1 Updated May 2, 2018
  • galaxy

    Forked from phnmnl/galaxy

    Data intensive science for everyone.

    Python 461 Updated Apr 23, 2018
  • Plugins developed for use in the ISAcreator. They should be placed in a 'Plugins' directory in the ISAcreator build environment.

    Java 3 2 Updated Mar 5, 2018
  • JavaScript MPL-2.0 Updated Feb 22, 2018
  • Example Jupyter notebooks using the ISA-API

    Jupyter Notebook 2 1 BSD-3-Clause Updated Feb 6, 2018
  • OWL Importer to Neo4j for FAIRsharing

    Java 4 1 BSD-3-Clause Updated Nov 30, 2017