@ISA-tools

ISA tools

Pinned repositories

  1. isa-api

    ISA tools API

    Python 11 9

  2. ISAcreator

    ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran…

    Java 23 18

  3. OntoMaton

    OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.

    JavaScript 19 3

  4. Risa

    Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset,…

    R 14 5

  5. linkedISA

    Package to convert ISA-TAB files into RDF data relying on different semantic frameworks (OWL ontologies).

    Java 8 5

  6. stato

    This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website:

    Web Ontology Language 5 5

  • Repository for ISA datasets, which may be available in different formats (tab, RDF, JSON)

    datasets isa-datasets isa-json isa-tab

    2 Updated Feb 24, 2017
  • ISA tools API

    python isa life-sciences-image data-management experimental-metadata

    Python 11 9 Updated Feb 24, 2017
  • Package to convert ISA-TAB files into RDF data relying on different semantic frameworks (OWL ontologies).

    Java 8 5 Updated Feb 23, 2017
  • Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure

    Python 3 3 Updated Feb 21, 2017
  • ISA Model and Serialization Specifications

    HTML 1 1 Updated Feb 15, 2017
  • a repo for a docker container for a microservice converting an MWTab to ISA-Tab format

    Shell 1 Updated Feb 15, 2017
  • Documentation for various xml2isa converters

    Python Updated Feb 9, 2017
  • ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran and Philippe Rocca-Serra (Uni. of Oxford).

    java data-management experimental-metadata isa-tab-dataset isacreator

    Java 23 18 Updated Feb 3, 2017
  • nmrml2isa for galaxy

    HTML Updated Feb 3, 2017
  • mzml2isa for galaxy

    HTML 2 3 Updated Feb 3, 2017
  • jUtils, a miscellanea of small and handy general purpose utilities for Java

    Java 2 2 Updated Feb 1, 2017
  • Generate ISA-Tab studies from .nmrML files

    Web Ontology Language Updated Jan 31, 2017
  • Python Updated Jan 30, 2017
  • Python Updated Jan 30, 2017
  • Python Updated Jan 25, 2017
  • This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website:

    statistics owl ontology

    Web Ontology Language 5 5 Updated Jan 16, 2017
  • Plugins developed for use in the ISAcreator. They should be placed in a 'Plugins' directory in the ISAcreator build environment.

    Java 3 2 Updated Jan 13, 2017
  • OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.

    google-spreadsheet ontology ols ontology-search ontology-lookup-services bioportal lov

    JavaScript 19 3 Updated Dec 28, 2016
  • Collaborative Open Plant Omics

    JavaScript 6 Updated Dec 14, 2016
  • Python parser for ISAtab, a biological file format for experimental metadata

    Python 16 3 Updated Nov 24, 2016
  • ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool

    4 8 Updated Nov 17, 2016
  • ISA tools wordpress theme

    JavaScript 1 Updated Oct 13, 2016
  • Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomi…

    bioconductor isa r-package isa-tab-dataset

    R 14 5 Updated Oct 12, 2016
  • The ISAvalidator, ISA converter and BII data manager tools

    Java 12 14 Updated Sep 27, 2016
  • xsl transformation from various XML format to ISA-Tab

    XSLT Updated Sep 12, 2016
  • The ISAconfigurator allows for creation of XML files (configuration files) used to build spreadsheets in the ISAcreator and for validation in the creator and ISAvalidation code. Led by Eamonn Maguire, Philippe Rocca-Serra (Uni. of Oxford).

    Java 13 9 Updated Sep 7, 2016
  • R 1 Updated Jul 28, 2016
  • A better sequence logo visualization

    JavaScript 15 Updated Jun 29, 2016
  • RESTful web service to use ISA API

    Python 2 1 Updated Jun 11, 2016
  • iPython notebooks for learning how to use the ISA API

    Jupyter Notebook 1 1 Updated Mar 14, 2016