This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website:
ISA tools API
Metabolomics Standards Initiative Ontology
Read/write/validation packages for the ISA tools API
jUtils, a miscellanea of small and handy general purpose utilities for Java
A lightweight web-based ISA-Tab viewer for multiple ISA-Tab files.
Example Jupyter notebooks using the ISA-API
Build files for isatools/isatools image on Docker Hub
Repository for ISA datasets, which may be available in different formats (tab, RDF, JSON)
Conda recipes for the bioconda channel.
mzml2isa for galaxy
Repository with exercises related to ISA
ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran, David Johnson and Philippe Rocca-Serra (Uni. of Oxford).
OWL Importer to Neo4j for FAIRsharing
Reproducibility study on a metabolomics dataset
JSON data package specifications for data matrices referenced from ISA metadata archive files.
Data intensive science for everyone.
A Galaxy datatype for the ISA format
xsl transformation from various XML format to ISA-Tab
Testing for the BioSharing widget
graph2tab, a library to convert experimental workflow graphs into tabular formats
Plugins developed for use in the ISAcreator. They should be placed in a 'Plugins' directory in the ISAcreator build environment.
ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool
OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.
A better sequence logo visualization
RESTful web service implementation for the MAGEtoISAconverter. You should
Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure
RESTful web service to use ISA API