forked from collaborative-open-plant-omics/COPO
Collaborative Open Plant Omics (with Vagrant/Puppet config)
Plugins developed for use in the ISAcreator. They should be placed in a 'Plugins' directory in the ISAcreator build environment.
ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool
This package is a generic implementation of a method for producing spreadsheets out of pipeline graphs. It is based on the computation of the minimum flow from all the sources to all the sink nodes, having set at 1 the lower bound for all the experimental workflow arcs (and no upper bound, i.e. capacity) restrictions.
Python parser for ISAtab, a biological file format for experimental metadata
forked from Tomnl/mzml2isa
Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure
The ISAvalidator, ISA converter and BII data manager tools
OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.
ISAcreator is a Java desktop application which allows for creation and editing of ISATab files. Led by Eamonn Maguire, Alejandra Gonzalez-Beltran and Philippe Rocca-Serra (Uni. of Oxford).
Package to convert ISA-TAB files into RDF data relying on different semantic frameworks (OWL ontologies).
Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomi…