@ISA-tools

ISA tools

Pinned repositories

  1. isa-api

    ISA tools API

    Python 12 21

  2. ISAcreator

    ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran…

    Java 27 21

  3. OntoMaton

    OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.

    JavaScript 21 3

  4. Risa

    Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset,…

    R 14 7

  5. linkedISA

    Package to convert ISA-TAB files into RDF data relying on different semantic frameworks (OWL ontologies).

    Java 8 4

  6. stato

    This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website:

    Java 8 5

  • Python 1 GPL-3.0 Updated Feb 23, 2018
  • This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website:

    Java 8 5 Updated Feb 18, 2018
  • ISA tools API

    Python 12 21 Updated Feb 17, 2018
  • Metabolomics Standards Initiative Ontology

    Java 1 Updated Feb 17, 2018
  • Read/write/validation packages for the ISA tools API

    Python 1 3 Updated Feb 15, 2018
  • jUtils, a miscellanea of small and handy general purpose utilities for Java

    Java 2 2 Updated Feb 15, 2018
  • A lightweight web-based ISA-Tab viewer for multiple ISA-Tab files.

    JavaScript 2 BSD-3-Clause Updated Feb 8, 2018
  • Example Jupyter notebooks using the ISA-API

    Jupyter Notebook 2 1 BSD-3-Clause Updated Feb 6, 2018
  • An ISA-Tab web viewing library written in Javascript.

    JavaScript 1 MIT Updated Jan 31, 2018
  • Build files for isatools/isatools image on Docker Hub

    2 Updated Jan 31, 2018
  • Repository for ISA datasets, which may be available in different formats (tab, RDF, JSON)

    3 5 Updated Jan 29, 2018
  • Conda recipes for the bioconda channel.

    Shell 578 Updated Jan 15, 2018
  • mzml2isa for galaxy

    HTML 3 6 Updated Jan 15, 2018
  • Repository with exercises related to ISA

    Jupyter Notebook 1 BSD-3-Clause Updated Dec 20, 2017
  • ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran, David Johnson and Philippe Rocca-Serra (Uni. of Oxford).

    Java 27 21 Updated Dec 6, 2017
  • OWL Importer to Neo4j for FAIRsharing

    Java 3 1 BSD-3-Clause Updated Nov 30, 2017
  • Reproducibility study on a metabolomics dataset

    R 2 Updated Nov 20, 2017
  • JSON data package specifications for data matrices referenced from ISA metadata archive files.

    Updated Nov 16, 2017
  • galaxy

    Forked from phnmnl/galaxy

    Data intensive science for everyone.

    Python 422 Updated Oct 30, 2017
  • A Galaxy datatype for the ISA format

    Python 1 Updated Oct 28, 2017
  • xsl transformation from various XML format to ISA-Tab

    XSLT LGPL-3.0 Updated Oct 18, 2017
  • Testing for the BioSharing widget

    HTML Updated Oct 11, 2017
  • graph2tab, a library to convert experimental workflow graphs into tabular formats

    Java 6 2 Updated Oct 8, 2017
  • Plugins developed for use in the ISAcreator. They should be placed in a 'Plugins' directory in the ISAcreator build environment.

    Java 3 2 Updated Oct 3, 2017
  • ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool

    4 9 Updated Aug 31, 2017
  • OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.

    JavaScript 21 3 Updated Aug 3, 2017
  • A better sequence logo visualization

    JavaScript 17 1 Updated Jul 3, 2017
  • RESTful web service implementation for the MAGEtoISAconverter. You should

    Java 1 1 Updated Jun 26, 2017
  • Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure

    Python 5 4 Updated Jun 16, 2017
  • RESTful web service to use ISA API

    Python 2 1 Updated Jun 15, 2017