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Merge pull request #749 two additional notebooks
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Add new HTAN notebooks to ISB-CGC Docs
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boaguilar committed Nov 15, 2023
2 parents c76896e + 80a4faa commit 3f4815d
Showing 1 changed file with 10 additions and 4 deletions.
14 changes: 10 additions & 4 deletions docs/source/sections/HTANNotebooks.rst
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Expand Up @@ -15,16 +15,22 @@ HTAN Notebooks
* - Utilizing the HTAN ID Provenance Google BigQuery Table
- `Python <https://github.com/isb-cgc/Community-Notebooks/blob/master/HTAN/Python%20Notebooks/HTAN_ID_Provenance_In_BQ.ipynb>`_
-
* - Investigating HTAN scRNA-seq with BigQuery
* - Constructing AnnData Objects with scRNA-seq Data from BigQuery
- `Python <https://github.com/isb-cgc/Community-Notebooks/blob/master/HTAN/Python%20Notebooks/Building_AnnData_with_Subset_of_Cells_from_BQ.ipynb>`_
-
* - Explore HTAN single cell RNA seq data
* - Exploring HTAN scRNA-seq data
- `Python <https://github.com/isb-cgc/Community-Notebooks/blob/master/HTAN/Python%20Notebooks/Investigating_Single_Cell_HTAN_Data.ipynb>`_
-
* - Explore Spatial Cellular and Molecular Relationships
* - Identifying Assay Data by Primary Organ Type in ISB-CGC
- `Python <https://github.com/isb-cgc/Community-Notebooks/blob/master/HTAN/Python%20Notebooks/Identifying_HTAN_Data_Files_by_Organ_in_ISB-CGC.ipynb>`_
-
* - Exploring HTAN MIBI Imaging data
- `Python <https://github.com/isb-cgc/Community-Notebooks/blob/master/HTAN/Python%20Notebooks/Analyzing_HTAN_MIBI_Imaging_Data.ipynb>`_
-
* - Exploring Spatial Cellular and Molecular Relationships
-
- `R <https://github.com/isb-cgc/Community-Notebooks/blob/master/HTAN/R%20Notebooks/Explore_HTAN_Spatial_Cellular_Relationships.md>`_
* - Explore HTAN Clinicial, Biospecimen, and Assay Metadata
* - Exploring HTAN Clinical, Biospecimen, and Assay Metadata
- `Python <https://github.com/isb-cgc/Community-Notebooks/blob/master/HTAN/Python%20Notebooks/Explore_HTAN_Clinical_Biospecimen_Assay_Metadata.ipynb>`_
- `R <https://github.com/isb-cgc/Community-Notebooks/blob/master/HTAN/R%20Notebooks/Explore_HTAN_Clinical_Biospecimen_Assay_Metadata.md>`_

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