Merge pull request #610 from isb-cgc/staging

Staging
isb-cgc · Aug 3, 2021 · 6f61489 · 6f61489
2 parents 2464ce3 + c7b14c5
commit 6f61489
Showing 1 changed file with 102 additions and 0 deletions.
diff --git a/docs/source/sections/ReleaseNotes/ISB-CGCDataReleases.rst b/docs/source/sections/ReleaseNotes/ISB-CGCDataReleases.rst
@@ -2,6 +2,108 @@
 ISB-CGC Data Release Notes
 ############################
 
+*August 2, 2021*
+
+New study, case metadata, file metadata, clinical, project-level per-sample file, and protein abundance log2ratio (quant) tables added to isb-cgc-bq for PDC V1.21.
+
+**BigQuery tables created**
+
+- isb-cgc-bq.CBTTC_versioned.quant_phosphoproteome_pediatric_brain_cancer_pilot_study_pdc_V1_21
+- isb-cgc-bq.CBTTC_versioned.quant_proteome_pediatric_brain_cancer_pilot_study_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.clinical_CPTAC3_other_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.clinical_proteogenomic_translational_research_centers_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.per_sample_file_metadata_CPTAC2_other_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.per_sample_file_metadata_CPTAC3_other_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.per_sample_file_metadata_proteogenomic_translational_research_centers_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_acetylome_CPTAC_GBM_discovery_study_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_acetylome_CPTAC_LUAD_discovery_study_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_acetylome_CPTAC_UCEC_discovery_study_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_acetylome_prospective_breast_BI_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_glycoproteome_prospective_ovarian_JHU_N_linked_glycosite_containing_peptide_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_phosphoproteome_CPTAC_CCRCC_discovery_study_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_phosphoproteome_CPTAC_GBM_discovery_study_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_phosphoproteome_CPTAC_HNSCC_discovery_study_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_phosphoproteome_CPTAC_LUAD_discovery_study_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_phosphoproteome_CPTAC_UCEC_discovery_study_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_phosphoproteome_prospective_breast_BI_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_phosphoproteome_prospective_colon_PNNL_lumos_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_phosphoproteome_prospective_ovarian_PNNL_lumos_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_proteome_CPTAC_CCRCC_discovery_study_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_proteome_CPTAC_GBM_discovery_study_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_proteome_CPTAC_HNSCC_discovery_study_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_proteome_CPTAC_LUAD_discovery_study_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_proteome_CPTAC_UCEC_discovery_study_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_proteome_prospective_breast_BI_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_proteome_prospective_colon_PNNL_qeplus_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_proteome_prospective_ovarian_JHU_pdc_V1_21
+- isb-cgc-bq.CPTAC_versioned.quant_proteome_prospective_ovarian_PNNL_qeplus_pdc_V1_21
+- isb-cgc-bq.ICPC_versioned.quant_phosphoproteome_HBV_related_hepatocellular_carcinoma_pdc_V1_21
+- isb-cgc-bq.ICPC_versioned.quant_phosphoproteome_proteogenomics_of_gastric_cancer_pdc_V1_21
+- isb-cgc-bq.ICPC_versioned.quant_proteome_HBV_related_hepatocellular_carcinoma_pdc_V1_21
+- isb-cgc-bq.ICPC_versioned.quant_proteome_proteogenomics_of_gastric_cancer_pdc_V1_21
+- isb-cgc-bq.PDC_metadata_versioned.aliquot_to_case_mapping_V1_21
+- isb-cgc-bq.PDC_metadata_versioned.case_metadata_V1_21
+- isb-cgc-bq.PDC_metadata_versioned.file_associated_entity_mapping_V1_21
+- isb-cgc-bq.PDC_metadata_versioned.file_metadata_V1_21
+- isb-cgc-bq.PDC_metadata_versioned.gene_info_V1_21
+- isb-cgc-bq.PDC_metadata_versioned.studies_V1_21
+- isb-cgc-bq.TCGA_versioned.clinical_CPTAC_TCGA_pdc_V1_21
+- isb-cgc-bq.TCGA_versioned.quant_phosphoproteome_TCGA_breast_cancer_pdc_V1_21
+- isb-cgc-bq.TCGA_versioned.quant_phosphoproteome_TCGA_ovarian_PNNL_velos_qexactive_pdc_V1_21
+- isb-cgc-bq.TCGA_versioned.quant_proteome_TCGA_breast_cancer_pdc_V1_21
+- isb-cgc-bq.TCGA_versioned.quant_proteome_TCGA_ovarian_JHU_pdc_V1_21
+- isb-cgc-bq.TCGA_versioned.quant_proteome_TCGA_ovarian_PNNL_pdc_V1_21
+
+
+**BigQuery tables updated**
+
+- isb-cgc-bq.CBTTC.quant_phosphoproteome_pediatric_brain_cancer_pilot_study_pdc_current
+- isb-cgc-bq.CBTTC.quant_proteome_pediatric_brain_cancer_pilot_study_pdc_current
+- isb-cgc-bq.CPTAC.clinical_CPTAC3_other_pdc_current
+- isb-cgc-bq.CPTAC.clinical_proteogenomic_translational_research_centers_pdc_current
+- isb-cgc-bq.CPTAC.per_sample_file_metadata_CPTAC2_other_pdc_current
+- isb-cgc-bq.CPTAC.per_sample_file_metadata_CPTAC3_other_pdc_current
+- isb-cgc-bq.CPTAC.per_sample_file_metadata_proteogenomic_translational_research_centers_pdc_current
+- isb-cgc-bq.CPTAC.quant_acetylome_CPTAC_GBM_discovery_study_pdc_current
+- isb-cgc-bq.CPTAC.quant_acetylome_CPTAC_LUAD_discovery_study_pdc_current
+- isb-cgc-bq.CPTAC.quant_acetylome_CPTAC_UCEC_discovery_study_pdc_current
+- isb-cgc-bq.CPTAC.quant_acetylome_prospective_breast_BI_pdc_current
+- isb-cgc-bq.CPTAC.quant_glycoproteome_prospective_ovarian_JHU_N_linked_glycosite_containing_peptide_pdc_current
+- isb-cgc-bq.CPTAC.quant_phosphoproteome_CPTAC_CCRCC_discovery_study_pdc_current
+- isb-cgc-bq.CPTAC.quant_phosphoproteome_CPTAC_GBM_discovery_study_pdc_current
+- isb-cgc-bq.CPTAC.quant_phosphoproteome_CPTAC_HNSCC_discovery_study_pdc_current
+- isb-cgc-bq.CPTAC.quant_phosphoproteome_CPTAC_LUAD_discovery_study_pdc_current
+- isb-cgc-bq.CPTAC.quant_phosphoproteome_CPTAC_UCEC_discovery_study_pdc_current
+- isb-cgc-bq.CPTAC.quant_phosphoproteome_prospective_breast_BI_pdc_current
+- isb-cgc-bq.CPTAC.quant_phosphoproteome_prospective_colon_PNNL_lumos_pdc_current
+- isb-cgc-bq.CPTAC.quant_phosphoproteome_prospective_ovarian_PNNL_lumos_pdc_current
+- isb-cgc-bq.CPTAC.quant_proteome_CPTAC_CCRCC_discovery_study_pdc_current
+- isb-cgc-bq.CPTAC.quant_proteome_CPTAC_GBM_discovery_study_pdc_current
+- isb-cgc-bq.CPTAC.quant_proteome_CPTAC_HNSCC_discovery_study_pdc_current
+- isb-cgc-bq.CPTAC.quant_proteome_CPTAC_LUAD_discovery_study_pdc_current
+- isb-cgc-bq.CPTAC.quant_proteome_CPTAC_UCEC_discovery_study_pdc_current
+- isb-cgc-bq.CPTAC.quant_proteome_prospective_breast_BI_pdc_current
+- isb-cgc-bq.CPTAC.quant_proteome_prospective_colon_PNNL_qeplus_pdc_current
+- isb-cgc-bq.CPTAC.quant_proteome_prospective_ovarian_JHU_pdc_current
+- isb-cgc-bq.CPTAC.quant_proteome_prospective_ovarian_PNNL_qeplus_pdc_current
+- isb-cgc-bq.ICPC.quant_phosphoproteome_HBV_related_hepatocellular_carcinoma_pdc_current
+- isb-cgc-bq.ICPC.quant_phosphoproteome_proteogenomics_of_gastric_cancer_pdc_current
+- isb-cgc-bq.ICPC.quant_proteome_HBV_related_hepatocellular_carcinoma_pdc_current
+- isb-cgc-bq.ICPC.quant_proteome_proteogenomics_of_gastric_cancer_pdc_current
+- isb-cgc-bq.PDC_metadata.aliquot_to_case_mapping_current
+- isb-cgc-bq.PDC_metadata.case_metadata_current
+- isb-cgc-bq.PDC_metadata.file_associated_entity_mapping_current
+- isb-cgc-bq.PDC_metadata.file_metadata_current
+- isb-cgc-bq.PDC_metadata.gene_info_current
+- isb-cgc-bq.PDC_metadata.studies_current
+- isb-cgc-bq.TCGA.clinical_CPTAC_TCGA_pdc_current
+- isb-cgc-bq.TCGA.quant_phosphoproteome_TCGA_breast_cancer_pdc_current
+- isb-cgc-bq.TCGA.quant_phosphoproteome_TCGA_ovarian_PNNL_velos_qexactive_pdc_current
+- isb-cgc-bq.TCGA.quant_proteome_TCGA_breast_cancer_pdc_current
+- isb-cgc-bq.TCGA.quant_proteome_TCGA_ovarian_JHU_pdc_current
+- isb-cgc-bq.TCGA.quant_proteome_TCGA_ovarian_PNNL_pdc_current
+
+
 *July 14, 2021*
 
 Added release 28 miRNAseq isoform table for CPTAC