Merge pull request #681 from isb-cgc/staging

Staging
isb-cgc · Jun 29, 2022 · 791ab13 · 791ab13
2 parents 3d4f9f5 + f186b06
commit 791ab13
Showing 1 changed file with 127 additions and 0 deletions.
diff --git a/docs/source/sections/ReleaseNotes/ISB-CGCDataReleases.rst b/docs/source/sections/ReleaseNotes/ISB-CGCDataReleases.rst
@@ -2,6 +2,133 @@
 ISB-CGC Data Release Notes
 ############################
 
+*June 23, 2022*
+
+HTAN data added
+
+**BigQuery tables created**
+
+- isb-cgc-bq.HTAN_versioned.scRNAseq_CHOP_seurat_regrCycleHeatShockGenes_pool_18Infants_scRNA_VEG3000_updated_rename_r2
+- isb-cgc-bq.HTAN_versioned.scRNAseq_CHOP_seurat_pool_logNorm_gini_FiveHD_10Xv3_downsample10000HSPC_r2
+- isb-cgc-bq.HTAN_versioned.scRNAseq_CHOP_seurat_integrated_18MLLr_normal_final_rename_r2
+- isb-cgc-bq.HTAN_versioned.schema_r2
+- isb-cgc-bq.HTAN_versioned.scRNAseq_VUMC_HTAN_VAL_EPI_V2_r2
+- isb-cgc-bq.HTAN_versioned.scRNAseq_VUMC_HTAN_VAL_DIS_NONEPI_V2_r2
+- isb-cgc-bq.HTAN_versioned.scRNAseq_VUMC_HTAN_DIS_EPI_V2_r2
+- isb-cgc-bq.HTAN_versioned.scRNAseq_VUMC_ABNORMALS_EPI_V2_r2
+- isb-cgc-bq.HTAN_versioned.clinical_tier1_therapy_r2
+- isb-cgc-bq.HTAN_versioned.scRNAseq_level4_metadata_r2
+- isb-cgc-bq.HTAN_versioned.scRNAseq_level3_metadata_r2
+- isb-cgc-bq.HTAN_versioned.scRNAseq_level2_metadata_r2
+- isb-cgc-bq.HTAN_versioned.scRNAseq_level1_metadata_r2
+- isb-cgc-bq.HTAN_versioned.scATACseq_level4_metadata_r2
+- isb-cgc-bq.HTAN_versioned.scATACseq_level3_metadata_r2
+- isb-cgc-bq.HTAN_versioned.scATACseq_level1_metadata_r2
+- isb-cgc-bq.HTAN_versioned.srrs_imaging_level2_metadata_r2
+- isb-cgc-bq.HTAN_versioned.srrs_clinical_tier2_r2
+- isb-cgc-bq.HTAN_versioned.srrs_biospecimen_r2
+- isb-cgc-bq.HTAN_versioned.proteomics_metadata_r2
+- isb-cgc-bq.HTAN_versioned.clinical_tier1_moleculartest_r2`
+- isb-cgc-bq.HTAN_versioned.metabolomics_metadata_r2
+- isb-cgc-bq.HTAN_versioned.clinical_tier3_lung_r2
+- isb-cgc-bq.HTAN_versioned.lipidomics_metadata_r2
+- isb-cgc-bq.HTAN_versioned.imaging_level2_metadata_r2
+- isb-cgc-bq.HTAN_versioned.clinical_tier1_followup_r2
+- isb-cgc-bq.HTAN_versioned.clinical_tier1_familyhistory_r2
+- isb-cgc-bq.HTAN_versioned.clinical_tier1_exposure_r2
+- isb-cgc-bq.HTAN_versioned.clinical_tier1_diagnosis_r2
+- isb-cgc-bq.HTAN_versioned.clinical_tier1_demographics_r2
+- isb-cgc-bq.HTAN_versioned.clinical_tier2_r2
+- isb-cgc-bq.HTAN_versioned.bulkWES_level2_metadata_r2
+- isb-cgc-bq.HTAN_versioned.bulkWES_level1_metadata_r2
+- isb-cgc-bq.HTAN_versioned.bulkRNAseq_level3_metadata_r2
+- isb-cgc-bq.HTAN_versioned.bulkRNAseq_level2_metadata_r2
+- isb-cgc-bq.HTAN_versioned.bulkRNAseq_level1_metadata_r2
+- isb-cgc-bq.HTAN_versioned.clinical_tier3_breast_r2
+- isb-cgc-bq.HTAN_versioned.biospecimen_r2
+- isb-cgc-bq.HTAN.scRNAseq_CHOP_seurat_regrCycleHeatShockGenes_pool_18Infants_scRNA_VEG3000_updated_rename_current
+- isb-cgc-bq.HTAN.scRNAseq_CHOP_seurat_pool_logNorm_gini_FiveHD_10Xv3_downsample10000HSPC_current
+- isb-cgc-bq.HTAN.scRNAseq_CHOP_seurat_integrated_18MLLr_normal_final_rename_current
+- isb-cgc-bq.HTAN.schema_current
+- isb-cgc-bq.HTAN.scRNAseq_VUMC_HTAN_VAL_EPI_V2_current
+- isb-cgc-bq.HTAN.scRNAseq_VUMC_HTAN_VAL_DIS_NONEPI_V2_current
+- isb-cgc-bq.HTAN.scRNAseq_VUMC_HTAN_DIS_EPI_V2_current
+- isb-cgc-bq.HTAN.scRNAseq_VUMC_ABNORMALS_EPI_V2_current
+- isb-cgc-bq.HTAN.clinical_tier1_therapy_current
+- isb-cgc-bq.HTAN.scRNAseq_level4_metadata_current
+- isb-cgc-bq.HTAN.scRNAseq_level3_metadata_current
+- isb-cgc-bq.HTAN.scRNAseq_level2_metadata_current
+- isb-cgc-bq.HTAN.scRNAseq_level1_metadata_current
+- isb-cgc-bq.HTAN.scATACseq_level4_metadata_current
+- isb-cgc-bq.HTAN.scATACseq_level3_metadata_current
+- isb-cgc-bq.HTAN.scATACseq_level1_metadata_current
+- isb-cgc-bq.HTAN.srrs_imaging_level2_metadata_current
+- isb-cgc-bq.HTAN.srrs_clinical_tiecurrent_current
+- isb-cgc-bq.HTAN.srrs_biospecimen_current
+- isb-cgc-bq.HTAN.proteomics_metadata_current
+- isb-cgc-bq.HTAN.clinical_tier1_moleculartest_current
+- isb-cgc-bq.HTAN.metabolomics_metadata_current
+- isb-cgc-bq.HTAN.clinical_tier3_lung_current
+- isb-cgc-bq.HTAN.lipidomics_metadata_current
+- isb-cgc-bq.HTAN.imaging_level2_metadata_current
+- isb-cgc-bq.HTAN.clinical_tier1_followup_current
+- isb-cgc-bq.HTAN.clinical_tier1_familyhistory_current
+- isb-cgc-bq.HTAN.clinical_tier1_exposure_current
+- isb-cgc-bq.HTAN.clinical_tier1_diagnosis_current
+- isb-cgc-bq.HTAN.clinical_tier1_demographics_current
+- isb-cgc-bq.HTAN.clinical_tier2_current
+- isb-cgc-bq.HTAN.bulkWES_level2_metadata_current
+- isb-cgc-bq.HTAN.bulkWES_level1_metadata_current
+- isb-cgc-bq.HTAN.bulkRNAseq_level3_metadata_current
+- isb-cgc-bq.HTAN.bulkRNAseq_level2_metadata_current
+- isb-cgc-bq.HTAN.bulkRNAseq_level1_metadata_current
+- isb-cgc-bq.HTAN.clinical_tier3_breast_current
+- isb-cgc-bq.HTAN.biospecimen_current
+
+*June 15, 2022*
+
+New clinical tables added to isb-cgc-bq for GDC release 33.
+
+**BigQuery tables created**
+
+- isb-cgc-bq.TRIO.clinical_gdc_current
+- isb-cgc-bq.TRIO_versioned.clinical_gdc_r33
+- isb-cgc-bq.TARGET_versioned.clinical_gdc_r33
+- isb-cgc-bq.HCMI_versioned.clinical_follow_ups_molecular_tests_gdc_r33
+- isb-cgc-bq.HCMI_versioned.clinical_follow_ups_gdc_r33
+- isb-cgc-bq.HCMI_versioned.clinical_diagnoses_treatments_gdc_r33
+- isb-cgc-bq.HCMI_versioned.clinical_diagnoses_gdc_r33
+- isb-cgc-bq.CTSP_versioned.clinical_gdc_r33
+- isb-cgc-bq.CMI_versioned.clinical_gdc_r33
+- isb-cgc-bq.CGCI_versioned.clinical_follow_ups_molecular_tests_gdc_r33
+- isb-cgc-bq.CGCI_versioned.clinical_follow_ups_gdc_r33
+- isb-cgc-bq.CGCI_versioned.clinical_diagnoses_treatments_gdc_r33
+- isb-cgc-bq.CGCI_versioned.clinical_diagnoses_gdc_r33
+- isb-cgc-bq.CGCI_versioned.clinical_gdc_r33
+- isb-cgc-bq.MP2PRT.clinical_gdc_current
+- isb-cgc-bq.MP2PRT_versioned.clinical_gdc_r33
+- isb-cgc-bq.EXC_RESPONDERS.clinical_diagnoses_treatments_gdc_current
+- isb-cgc-bq.EXC_RESPONDERS_versioned.clinical_diagnoses_treatments_gdc_r33
+- isb-cgc-bq.EXC_RESPONDERS.clinical_diagnoses_gdc_current
+- isb-cgc-bq.EXC_RESPONDERS_versioned.clinical_diagnoses_gdc_r33
+- isb-cgc-bq.EXC_RESPONDERS.clinical_gdc_current
+- isb-cgc-bq.EXC_RESPONDERS_versioned.clinical_gdc_r33
+
+**BigQuery tables updated**
+
+- isb-cgc-bq.TARGET.clinical_gdc_current
+- isb-cgc-bq.HCMI.clinical_follow_ups_molecular_tests_gdc_current
+- isb-cgc-bq.HCMI.clinical_follow_ups_gdc_current
+- isb-cgc-bq.HCMI.clinical_diagnoses_treatments_gdc_current
+- isb-cgc-bq.HCMI.clinical_diagnoses_gdc_current
+- isb-cgc-bq.CTSP.clinical_gdc_current
+- isb-cgc-bq.CMI.clinical_gdc_current
+- isb-cgc-bq.CGCI.clinical_follow_ups_molecular_tests_gdc_current
+- isb-cgc-bq.CGCI.clinical_follow_ups_gdc_current
+- isb-cgc-bq.CGCI.clinical_diagnoses_treatments_gdc_current
+- isb-cgc-bq.CGCI.clinical_diagnoses_gdc_current
+- isb-cgc-bq.CGCI.clinical_gdc_current
+
 
 *May 5, 2022*