Merge pull request #690 from isb-cgc/Remove-SA-Registration

Remove sa registration

docs/source/index.rst

@@ -49,7 +49,7 @@ The `ISB-CGC <https://isb-cgc.org>`_ aims to serve the needs of a broad range of
    sections/SyntheticLethality_resource
    sections/ProgrammaticAccess
    sections/data/TCGA_Data_Security
-   sections/Gaining-Access-To-Controlled-Access-Data 
+   sections/Gaining-Access-To-Controlled-Access-Data
 
 .. toctree::
    :hidden:

docs/source/sections/Gaining-Access-To-Controlled-Access-Data.rst

@@ -2,19 +2,11 @@
 Accessing Controlled Data
 ************************************************
 
-You can gain access to  **controlled data** by two different methods via ISB-CGC. The methods can be used simultaneously if needed.
-
-Select this method for `controlled access via personal user credentials <controlled-access/Controlled-data-Interactive.html>`_: 
+In ISB-CGC, you can gain access to `controlled data via personal user credentials <controlled-access/Controlled-data-Interactive.html>`_: 
 
   * Provides access to controlled data for 24 hours at a time;
   * Uses your *personal* credentials;
   * Example uses: the ISB-CGC Web App, R Studio or running short jobs on Google Compute Engine that complete in under 24 hours
-
-Select this method for `controlled access via service account credentials <controlled-access/Controlled-data-GCP.html>`_:
-
-  * Provides access to controlled data for seven days at a time;
-  * Uses the credentials of a *service account*, acting on your behalf (To learn about service accounts, refer to the Google `documentation <https://cloud.google.com/iam/docs/service-accounts>`_.);
-  * Example uses: using a Google Cloud Project; running a program from a Google Compute Engine (GCE) Virtual Machine (VM) that takes longer than 24 hours to complete
 
 .. note:: If you are looking to gain access to COSMIC data, please see the `COSMIC documentation <data/COSMIC_about.html>`_.
 
@@ -56,8 +48,7 @@ For more information on applying for dbGaP authorization to access controlled da
 this dbGap How to Video: `Apply for Controlled Access Data <http://www.youtube.com/watch?v=-3tUBeKbP5c>`_.
 
 For additional information, refer to `Tips for Preparing a Successful Data Access Request <https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/GetPdf.cgi?document_name=GeneralAAInstructions.pdf>`_, 
-and `Understanding Data Security <data/TCGA_Data_Security.html>`_.  Please be sure to review the Data Use Certification Agreement for `TCGA controlled data <https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000178.v9.p8>`_ and `TARGET controlled data <https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000218.v17.p6>`_. 
-
+and `Understanding Data Security <data/TCGA_Data_Security.html>`_.  Please be sure to review any pertinent Data Use Certification Agreements on dbGaP.
 
 4) Link your NIH/eRA and Google identities.
 +++++++++++++++++++++++++++++++++++++++++++
@@ -87,53 +78,10 @@ These prerequisite steps only need to be done once, unless your accounts become
 Controlled Access Via Personal User Credentials
 -----------------------------------------------
 
-The first time that you perform the above steps, you are automatically granted controlled access via your personal uer credentials. This access lasts for 24 hours, though it can be extended. Subsequently, to obtain access, sign into the Web App, click on your persona (or **Account Details** on the drop down menu next to your name). Click the **Get Controlled Access** button below **Obtain controlled access for 24 hours**.
+The first time that you perform the above steps, you are automatically granted controlled access via your personal user credentials. This access lasts for 24 hours, though it can be extended. Subsequently, to obtain access, sign into the Web App, click on your persona (or **Account Details** on the drop down menu next to your name). Click the **Get Controlled Access** button below **Obtain controlled access for 24 hours**.
 
 .. image:: controlled-access/DataAccess-24hours.png
    :align: center
 
-
-Controlled Access Via Service Account Credentials
--------------------------------------------------
-
-To access controlled data programmatically, such as through Google Cloud or when running a VM, you'll need to register a GCP and service account. Follow these steps:
-
-   * `Registering a Google Cloud Project & Service Account <controlled-access/Controlled-data-GCP.html>`_
-
-.. toctree::
-   :maxdepth: 1
-   :hidden:
 
-   controlled-access/Controlled-data-GCP
 
-
-Controlled Access in the Google BigQuery Console
-------------------------------------------------------
-
-The BigQuery project "isb-cgc-cbq" contains the ISB-CGC controlled access data which is stored in BigQuery tables. To obtain access to these ISB-CGC tables within the Google BigQuery Console, you must link to them within the BigQuery Console. Before doing so, you must have followed all the prerequisites above, including  `linking your Google identity to your NIH/eRA account  <controlled-access/Controlled-data-Interactive.html>`_ via the ISB-CGC Web App.
-
-When you access BigQuery from your Google Cloud Platform Console (see `here <progapi/bigqueryGUI/HowToAccessBigQueryFromTheGoogleCloudPlatform.html>`_ for more information on this), you will be presented with the following page:
-
-.. image:: progapi/bigqueryGUI/BlueArrowDropdown.PNG
-   :scale: 25
-   :align: center
-
-The blue arrow will produce a drop down list; select 'Switch to Project'; then click 'display project...'
-
-You will then be presented with the following page:
-
-.. image:: progapi/bigqueryGUI/SearchProjectSection.PNG
-   :scale: 25
-   :align: center
-
-As shown in the image below you will need to type in "isb-cgc-cbq" in the project id and then click okay. 
-
-.. image:: progapi/bigqueryGUI/CABQisb-cgc-pinning.PNG
-   :scale: 25
-   :align: center
-
-Once this has been completed you will be able to see the appropriate controlled access ISB-CGC BigQuery data sets on the left hand side (see screenshot below).
-
-.. image:: progapi/bigqueryGUI/isb-cgc-cbq_tablename.PNG
-   :scale: 25
-   :align: center

docs/source/sections/Web-UI.rst

@@ -22,6 +22,7 @@ Over time we will be updating and enhancing this web interface based on your fee
    webapp/GraphingUserData
    webapp/IGV-Browser
    webapp/OsimisWebViewer
+   webapp/Register-GCP
 
 **Data used by the Web App**