Merge pull request #641 from isb-cgc/staging

Staging
isb-cgc · Oct 25, 2021 · 81c453a · 81c453a
2 parents 853289b + c81e8b0
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diff --git a/docs/source/sections/BigQuery/BigQueryTableSearchUI.png b/docs/source/sections/BigQuery/BigQueryTableSearchUI.png
diff --git a/docs/source/sections/HowToGetStarted-Analysis.rst b/docs/source/sections/HowToGetStarted-Analysis.rst
@@ -13,24 +13,28 @@ filter data from one or more public data sets (such as TCGA, CCLE, and TARGET),
    :widths: 60, 40
    :header-rows: 0 
 
-   * - **Cohort Builder/Data Explorer**
+   * - Cohort Builder/Data Explorer
          | *Create and explore cohorts of interest*
      - * `ISB-CGC Cohort Builder/Data Explorer Documentation <DataExplorer.html>`_ 
        * `ISB-CGC Cohort Builder/Data Explorer <https://isb-cgc.appspot.com/cohorts/new_cohort/>`_ 
-   * - **Interactive Pathology and Radiology Image Viewers**  
+   * - Interactive Pathology and Radiology Image Viewers  
         | *View images from cancer patients using integrated image viewers*
      - * `ISB-CGC Image Viewers Documentation <https://isb-cancer-genomics-cloud.readthedocs.io/en/latest/sections/webapp/OsimisWebViewer.html>`_ 
-   * - **Integrative Genomics Viewer (IGV)**
+   * - Integrative Genomics Viewer (IGV)
         | *Explore and visualize genomic data*
      - * `ISB-CGC Integrative Genomics Viewer (IGV) Documentation <https://isb-cancer-genomics-cloud.readthedocs.io/en/latest/sections/webapp/IGV-Browser.html>`_
-   * - **Cancer Data File Browser**   
+   * - Cancer Data File Browser   
         | *Browse and identify files associated with cohorts of interest*
      - * `ISB-CGC Cancer Data File Browser Documentation <DataBrowser.html>`_
        * `ISB-CGC Cancer Data File Browser <https://isb-cgc.appspot.com/cohorts/filelist/>`_ 
-   * - **Mitelman Database for Chromosome Aberrations and Gene Fusions in Cancer**
+   * - Mitelman Database for Chromosome Aberrations and Gene Fusions in Cancer
         | *Explore relationships between chromosomal changes and cancer*
      - * `ISB-CGC Mitelman Database Documentation <https://isb-cancer-genomics-cloud.readthedocs.io/en/latest/sections/data/Mitelman_about.html>`_
        * `ISB-CGC Mitelman Database <https://mitelmandatabase.isb-cgc.org/>`_
+   * - The *TP53* Database
+        | *Explore TP53 variant data that have been reported in the published literature or are available in other public databases.*
+     - * ISB-CGC The *TP53* Database `Documentation <https://isb-cancer-genomics-cloud.readthedocs.io/en/latest/sections/the_TP53_databaset.html>`_
+       * ISB-CGC The *TP53* `Database <https://tp53.isb-cgc.org/>`_
 
 Cancer data analysis using Google BigQuery
 ##########################################################

diff --git a/docs/source/sections/ReleaseNotes/TP53_release_notes.rst b/docs/source/sections/ReleaseNotes/TP53_release_notes.rst
@@ -0,0 +1,11 @@
+#################################
+The *TP53* Database Release Notes
+#################################
+
+The *TP53* Database compiles various types of data and information from the literature and generalist databases on human *TP53* gene variations related to cancer.
+ISB-CGC started hosting this database on October 25, 2021. Release notes for all releases can be found `here <https://tp53.isb-cgc.org/about#database-dev-div>`_.
+
+To search this database hosted by the ISB-CGC, please visit The *TP53* Database at https://tp53.isb-cgc.org.
+
+For more detailed information about The *TP53* Database, 
+see `the documentation <https://isb-cancer-genomics-cloud.readthedocs.io/en/latest/sections/the_TP53_database.html>`_.
diff --git a/docs/source/sections/Releases.rst b/docs/source/sections/Releases.rst
@@ -11,6 +11,7 @@ The ISB-CGC has created documentation to inform researchers about major changes
    ReleaseNotes/MigrationToISB-CGC-BQ
    ReleaseNotes/BigQueryTableSearchReleaseNotes
    ReleaseNotes/MitelmanReleaseNotes
+   ReleaseNotes/TP53_release_notes
    ReleaseNotes/WebAppReleaseNotes
 
 

diff --git a/docs/source/sections/webapp/Overview.rst b/docs/source/sections/webapp/Overview.rst
@@ -13,7 +13,8 @@ Also on this page are links to:
 
 - ISB-CGC BigQuery Table Search 
 - Cancer Data File Browser
-- Chromosomal Aberations & Gene Fusions (Mitelman) database 
+- Chromosomal Aberations & Gene Fusions (Mitelman) database
+- The *TP53* Database
 - Cohort Builder/Data Explorer
 - Pipelines and APIs
 - Notebooks

diff --git a/docs/source/sections/webapp/startscreen-nologin.png b/docs/source/sections/webapp/startscreen-nologin.png