Skip to content

Commit

Permalink
Merge pull request #634 from isb-cgc/John-staging
Browse files Browse the repository at this point in the history
Add teaching sessions page
  • Loading branch information
jhphan committed Oct 14, 2021
2 parents dff74c3 + 72cb8ef commit 88c6172
Show file tree
Hide file tree
Showing 2 changed files with 29 additions and 11 deletions.
25 changes: 25 additions & 0 deletions docs/source/sections/Tutorials/TeachingSessions_Workshops.rst
Original file line number Diff line number Diff line change
@@ -0,0 +1,25 @@
*******************************
Teaching Sessions and Workshops
*******************************

NIH Library Session - October 14th, 2021
========================================

We offered a half-day online bioinformatics workshop in collaboration with the NIH Library on October 14th, 2021. This workshop included a two hour interactive data science and bioinformatics component using the R statistical language and Google Cloud (BigQuery) to explore NCI genomic and proteomics (TCGA) datasets. The following outline of the interactive workshop links to Jupyter notebooks used during the training. These notebooks can be executed in Google Colab or other Jupyter environments.

* `Exploration of BigQuery Datasets <https://github.com/isb-cgc/Community-Notebooks/blob/master/TeachingMaterials/2021-10-NIHLibrarySession/BigQueryExploration.ipynb>`_

* Select age of cases in a project
* Characterize expression of a single gene in normal and tumor samples
* Find annotation information for a gene
* Find and plot all mutations in and around a gene
* Join mutation data with survival data

* `Large-Scale Statistical Analysis in BigQuery <https://github.com/isb-cgc/Community-Notebooks/blob/master/TeachingMaterials/2021-10-NIHLibrarySession/BigQueryCorrelations.ipynb>`_
* `Survival Analysis in BigQuery <https://github.com/isb-cgc/Community-Notebooks/blob/master/TeachingMaterials/2021-10-NIHLibrarySession/BigQuerySurvival.ipynb>`_
* `Introduction to BigQuery Machine Learning <https://github.com/isb-cgc/Community-Notebooks/blob/master/TeachingMaterials/2021-10-NIHLibrarySession/BigQueryMachineLearning.ipynb>`_

* Train a classifier that uses expression profiles to predict tumor status
* Evaluate the classifier
* Use the classifier to predict tumor status of future samples

15 changes: 4 additions & 11 deletions docs/source/sections/TutorialsAndHow-ToGuides.rst
Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
*****************************
****************************
Tutorials and How-To Guides
*****************************
****************************

The links on this page connect to How-To guides, examples and other helpful tutorials. We encourage the community to provide feedback on these examples and also to add your own examples to enrich this public resource! Contact us at feedback@isb-cgc.org
The links on this page connect to How-To guides, workshop materials, examples and other helpful tutorials. We encourage the community to provide feedback on these examples and also to add your own examples to enrich this public resource! Contact us at feedback@isb-cgc.org.

.. toctree::
:maxdepth: 1
Expand All @@ -11,13 +11,6 @@ The links on this page connect to How-To guides, examples and other helpful tuto
QueryOfTheMonthClub
GDCTutorials/FromGDCtoISBCGC
Tutorials/KidneyCancerDemo/KidneyCancerDemo








Tutorials/TeachingSessions_Workshops


0 comments on commit 88c6172

Please sign in to comment.