Merge pull request #605 from isb-cgc/staging

Staging
isb-cgc · Jul 20, 2021 · 91361b8 · 91361b8
2 parents f23f9f9 + 839140a
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diff --git a/docs/source/sections/HowTos.rst b/docs/source/sections/HowTos.rst
@@ -58,7 +58,12 @@ I'm a novice, how do I...
    * - Use the ISB-CGC APIs?
      - `Python <https://nbviewer.jupyter.org/github/isb-cgc/Community-Notebooks/blob/master/Notebooks/How_to_use_ISB_CGC_APIs.ipynb>`_
      - `R <https://github.com/isb-cgc/Community-Notebooks/blob/master/Notebooks/How_to_use_ISB-CGC_APIs.md>`_
-
+   * - Explore CPTAC protein abundances?
+     - `Python <https://nbviewer.jupyter.org/github/isb-cgc/Community-Notebooks/blob/master/Notebooks/How_to_explore_CPTAC_protein_abundances.ipynb>`_
+     - 
+   * - Compare protein and gene expression in CPTAC?
+     - `Python <https://nbviewer.jupyter.org/github/isb-cgc/Community-Notebooks/blob/master/Notebooks/How_to_compare_protein_and_gene_expression_CPTAC.ipynb>`_
+     - 
 
 I'm an advanced user, how do I...
 -------------------------
@@ -104,7 +109,11 @@ I'm an advanced user, how do I...
    * - Use a BigQuery user defined function to perform k-means clustering?
      - `Python <https://nbviewer.jupyter.org/github/isb-cgc/Community-Notebooks/blob/master/Notebooks/How_to_cluster_data_using_a_BigQuery_function.ipynb>`_
      - 
-   * - Explore CPTAC protein abundances?
-     - `Python <https://nbviewer.jupyter.org/github/isb-cgc/Community-Notebooks/blob/master/Notebooks/How_to_explore_CPTAC_protein_abundances.ipynb>`_
-     -    
+   * - Compute correlations of protein and gene expression in CPTAC?
+     - `Python <https://nbviewer.jupyter.org/github/isb-cgc/Community-Notebooks/blob/master/RegulomeExplorer/Correlations_Protein_and_Gene_expression_CPTAC.ipynb>`_
+     - 
+   * - Compare protein expression from different pipelines using CPTAC data?
+     - `Python <https://nbviewer.jupyter.org/github/isb-cgc/Community-Notebooks/blob/master/RegulomeExplorer/Comparing_protein_expression_from_different_pipelines_CPTAC.ipynb>`_
+     - 
+
 *Notebook inspired by a `Query of the Month Blog <QueryOfTheMonthClub.html>`_ post
diff --git a/docs/source/sections/ReleaseNotes/ISB-CGCDataReleases.rst b/docs/source/sections/ReleaseNotes/ISB-CGCDataReleases.rst
@@ -2,9 +2,18 @@
 ISB-CGC Data Release Notes
 ############################
 
+*July 14, 2021*
+
+Added release 28 miRNAseq isoform table for CPTAC
+
+**BigQuery tables created**
+
+- isb-cgc-bq.CPTAC_versioned.miRNAseq_isoform_hg38_gdc_r28
+- isb-cgc-bq.CPTAC.miRNAseq_isoform_hg38_gdc_current
+
 *June 21, 2021*
 
-Updated the release 28 miRNAseq tables to include the sample_type_name field
+Updated the release 28 CPTAC miRNAseq tables to include the sample_type_name field
 
 **BigQuery tables created**
 

diff --git a/docs/source/sections/ReleaseNotes/WebAppReleaseNotes.rst b/docs/source/sections/ReleaseNotes/WebAppReleaseNotes.rst
@@ -6,6 +6,7 @@ ISB-CGC Web App Release Notes
 
 - The Warning Notice about accessing a government website that should pop up when ISB-CGC is accessed was missing. It has been reinstated.
 - There was an issue loading the Variable selection page. This has been fixed.
+- On the Create and Edit Variable screens, the data set/programs tabs have been changed to a drop down.
 - In some cases when creating a cohort with multiple programs, the Data Set Clinical Features panel was not displaying the appropriate information. This has been corrected.
 - The system now logs when users refresh their 24 hour access at DCF so that this can be monitored.