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Update ISB-CGCDataReleases.rst
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lhagen-isb committed Feb 10, 2022
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ISB-CGC Data Release Notes
############################

*February 10, 2022*

New clinical tables added to isb-cgc-bq for GDC release 31.

**BigQuery tables created**

- isb-cgc-bq.REBC_versioned.clinical_gdc_r31
- isb-cgc-bq.REBC.clinical_gdc_current
- isb-cgc-bq.REBC_versioned.clinical_diagnoses_treatments_gdc_r31
- isb-cgc-bq.REBC.clinical_diagnoses_treatments_gdc_current
- isb-cgc-bq.TRIO_versioned.clinical_gdc_r31
- isb-cgc-bq.TRIO.clinical_gdc_current
- isb-cgc-bq.BEATAML1_0_versioned.clinical_gdc_r31
- isb-cgc-bq.CGCI_versioned.clinical_gdc_r31
- isb-cgc-bq.CGCI_versioned.clinical_diagnoses_gdc_r31
- isb-cgc-bq.CGCI_versioned.clinical_diagnoses_treatments_gdc_r31
- isb-cgc-bq.CGCI_versioned.clinical_follow_ups_gdc_r31
- isb-cgc-bq.CPTAC_versioned.clinical_gdc_r31
- isb-cgc-bq.CTSP_versioned.clinical_gdc_r31
- isb-cgc-bq.FM_versioned.clinical_gdc_r31
- isb-cgc-bq.GENIE_versioned.clinical_gdc_r31
- isb-cgc-bq.HCMI_versioned.clinical_gdc_r31
- isb-cgc-bq.HCMI_versioned.clinical_diagnoses_gdc_r31
- isb-cgc-bq.HCMI_versioned.clinical_diagnoses_treatments_gdc_r31
- isb-cgc-bq.HCMI_versioned.clinical_follow_ups_gdc_r31
- isb-cgc-bq.HCMI_versioned.clinical_follow_ups_molecular_tests_gdc_r31
- isb-cgc-bq.MMRF_versioned.clinical_gdc_r31
- isb-cgc-bq.NCICCR_versioned.clinical_gdc_r31
- isb-cgc-bq.OHSU_versioned.clinical_gdc_r31
- isb-cgc-bq.ORGANOID_versioned.clinical_gdc_r31
- isb-cgc-bq.TARGET_versioned.clinical_gdc_r31
- isb-cgc-bq.TCGA_versioned.clinical_gdc_r31
- isb-cgc-bq.VAREPOP_versioned.clinical_gdc_r31
- isb-cgc-bq.WCDT_versioned.clinical_gdc_r31

Current clinical tables updated to GDC release 31.

**BigQuery tables updated**

- isb-cgc-bq.BEATAML1_0.clinical_gdc_current
- isb-cgc-bq.CGCI.clinical_gdc_current
- isb-cgc-bq.CGCI.clinical_diagnoses_gdc_current
- isb-cgc-bq.CGCI.clinical_diagnoses_treatments_gdc_current
- isb-cgc-bq.CGCI.clinical_follow_ups_gdc_current
- isb-cgc-bq.CPTAC.clinical_gdc_current
- isb-cgc-bq.CTSP.clinical_gdc_current
- isb-cgc-bq.FM.clinical_gdc_current
- isb-cgc-bq.GENIE.clinical_gdc_current
- isb-cgc-bq.HCMI.clinical_gdc_current
- isb-cgc-bq.HCMI.clinical_diagnoses_gdc_current
- isb-cgc-bq.HCMI.clinical_diagnoses_treatments_gdc_current
- isb-cgc-bq.HCMI.clinical_follow_ups_gdc_current
- isb-cgc-bq.HCMI.clinical_follow_ups_molecular_tests_gdc_current
- isb-cgc-bq.MMRF.clinical_gdc_current
- isb-cgc-bq.NCICCR.clinical_gdc_current
- isb-cgc-bq.OHSU.clinical_gdc_current
- isb-cgc-bq.ORGANOID.clinical_gdc_current
- isb-cgc-bq.TARGET.clinical_gdc_current
- isb-cgc-bq.TCGA.clinical_gdc_current
- isb-cgc-bq.VAREPOP.clinical_gdc_current
- isb-cgc-bq.WCDT.clinical_gdc_current

*January 26, 2022*

New GENCODE annotation tables.
Expand All @@ -28,7 +90,7 @@ BigQuery tables updated

*December 7, 2021*

New per sample file metadata added to isb-cgc-bq for GDC release 30.
New per sample file metadata added to isb-cgc-bq for GDC release 30.

**BigQuery tables created**

Expand All @@ -39,6 +101,10 @@ New per sample file metadata added to isb-cgc-bq for GDC release 30.
- isb-cgc-bq.CPTAC_versioned.per_sample_file_metadata_hg38_gdc_r30
- isb-cgc-bq.TCGA_versioned.per_sample_file_metadata_hg38_gdc_r30
- isb-cgc-bq.TARGET_versioned.per_sample_file_metadata_hg38_gdc_r30
- isb-cgc-bq.REBC.per_sample_file_metadata_hg38_gdc_current
- isb-cgc-bq.REBC_versioned.per_sample_file_metadata_hg38_gdc_r30
- isb-cgc-bq.TRIO.per_sample_file_metadata_hg38_gdc_current
- isb-cgc-bq.TRIO_versioned.per_sample_file_metadata_hg38_gdc_r30

Current per sample file metadata tables updated to GDC release 30.

Expand All @@ -52,6 +118,8 @@ Current per sample file metadata tables updated to GDC release 30.
- isb-cgc-bq.TCGA_versioned.per_sample_file_metadata_hg38_gdc_current
- isb-cgc-bq.TARGET_versioned.per_sample_file_metadata_hg38_gdc_current

New Datasets REBC, REBC_versioned, TRIO, and TRIO_versioned were created.

*November 3, 2021 and December 3, 2021*

New file metadata tables added to isb-cgc-bq for GDC release 30.
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