Merge pull request #745 from isb-cgc/staging

Staging
isb-cgc · Sep 21, 2023 · dea5c38 · dea5c38
2 parents 54cd40a + d3891b9
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diff --git a/docs/source/index.rst b/docs/source/index.rst
@@ -44,23 +44,36 @@ The `ISB-CGC <https://isb-cgc.org>`_ aims to serve the needs of a broad range of
    sections/Web-UI
    sections/DataExplorer
    sections/DataBrowser
+   sections/data/TCGA_Data_Security
+   sections/Gaining-Access-To-Controlled-Access-Data
+
+.. toctree::
+   :hidden:
+   :maxdepth: 1
+   :caption: MORE ISB-CGC RESOURCES
+
    sections/data/Mitelman_about
    sections/the_TP53_database
    sections/SyntheticLethality_resource
    sections/data/HTAN_about
    sections/ProgrammaticAccess
-   sections/data/TCGA_Data_Security
-   sections/Gaining-Access-To-Controlled-Access-Data
 
 .. toctree::
    :hidden:
    :maxdepth: 1
-   :caption: MORE INFORMATION
+   :caption: NOTEBOOKS
 
    sections/HowTos
    sections/RegulomeExplorerNotebooks
    sections/MachineLearningNotebooks
    sections/HTANNotebooks
+   sections/MitelmanDBNotebooks
+
+.. toctree::
+   :hidden:
+   :maxdepth: 1
+   :caption: MORE INFORMATION
+
    sections/TutorialsAndHow-ToGuides
    sections/Releases
    sections/Quick-links-updated

diff --git a/docs/source/sections/MitelmanDBNotebooks.rst b/docs/source/sections/MitelmanDBNotebooks.rst
@@ -0,0 +1,20 @@
+**************************
+MitelmanDB Notebooks
+**************************
+
+The `Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer <https://mitelmandatabase.isb-cgc.org/>`_  is devoted to genes, chromosomes, and cancer. The Mitelman Database is supported by NCI (National Cancer Institute), the Swedish Cancer Society and the Swedish Childhood Cancer. `The Mitelman Database <https://mitelmandatabase.isb-cgc.org/>`_ is available from ISB-CGC to access and search the data.
+
+.. list-table:: 
+   :widths: 100 10 10
+   :align: center
+   :header-rows: 0
+
+   * - Exploring and comparing the Mitelman DB, CytoConverter, and TCGA datasets
+     - `Python <https://github.com/isb-cgc/Community-Notebooks/blob/master/MitelmanDB/Exploring_and_comparing_MitelmanDB_CytoConverter_and_TCGA_datasets.ipynb>`_
+     - 
+   * - Cytogenetics and Data Subsets in the Mitelman Database
+     - `Python <https://github.com/isb-cgc/Community-Notebooks/blob/master/MitelmanDB/Mitelman_Cytogenetics_Subsets.ipynb>`_
+     - 
+   * - Correlations between Mitelman and TCGA datasets
+     - `Python <https://github.com/isb-cgc/Community-Notebooks/blob/master/MitelmanDB/Correlations_MitelmanDB_and_TCGA_datasets.ipynb>`_
+     -