This repository contains code and data for the paper titled "State-space modeling of the dynamics of temporal plant cover using visually determined class data," published in PeerJ 8:e9383 doi:10.7717/peerj.9383
- ssmcover.R: R script for the model fitting.
- ssmcover.stan: Stan model file.
- init/init*.R: Initial values
- Table S1.txt: Data file from "Data on forest regeneration after catastrophic windthrow in the headwater region of the Ishikari River, Hokkaido, Japan" (DOI:10.20756/ffpri.17.3_265). This file is redistributable under CC-BY 4.0, and available from figshare https://doi.org/10.6084/m9.figshare.6442796.v2.