Seissol first example to workflow

.gitignore

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 *.sw?
 
+.idea

.travis.yml

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+---
+dist: xenial
+language: python
+python: 3.7
+services: docker
+install:
+- git clone https://github.com/systemslab/popper /tmp/popper
+- export PYTHONUNBUFFERED=1
+- pip install /tmp/popper/cli
+script: popper run

actions/seissol/Dockerfile

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+FROM debian:buster-slim
+
+ENV DEBIAN_FRONTEND=noninteractive
+
+RUN apt update && \
+    apt install -y \
+      curl git \
+      build-essential gfortran cmake \
+      libeigen3-dev \
+      libopenmpi-dev \
+      libhdf5-dev libhdf5-mpi-dev \
+      libnetcdf-dev libnetcdf-mpi-dev \
+      virtualenv && \
+    virtualenv -p python3 /scons && \
+    bash -c 'source /scons/bin/activate && pip install numpy>=1.12.0 lxml scons' && \
+    rm -rf /var/lib/apt/lists/*
+
+# install libxsmm
+RUN curl -LO https://github.com/hfp/libxsmm/archive/master.tar.gz && \
+    tar xvfz master.tar.gz && \
+    cd libxsmm-master && \
+    make generator && \
+    cp bin/libxsmm_gemm_generator /usr/bin && \
+    cd / && \
+    rm -rf libxsmm-master /var/lib/apt/lists/*
+
+ENV CPATH=/usr/lib/x86_64-linux-gnu/netcdf/mpi/include
+
+ADD entrypoint.sh /
+
+ENTRYPOINT ["/entrypoint.sh"]

actions/seissol/entrypoint.sh

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+#!/bin/bash
+set -e
+
+source /scons/bin/activate
+
+if [ ! -d "seissol" ]; then
+  echo "Expecting seissol/ folder"
+  exit 1
+fi
+
+cd seissol/
+
+scons "$@"

workflows/scc18/main.workflow

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+workflow "scc 18" {
+  resolves = "download"
+}
+
+action "download" {
+  uses = "popperized/zenodo/download@master"
+  env = {
+    ZENODO_RECORD_ID = "439946"
+    ZENODO_OUTPUT_PATH = "./workflows/scc18/zenodo-files"
+    ZENODO_FILES="parameters.par"
+  }
+}

workflows/tpv33/main.workflow

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+workflow "containers" {
+  on = "push"
+  resolves = "execute"
+}
+
+action "build and test" {
+  uses = "./actions/seissol"
+  args = [
+   "compileMode=release",
+   "order=6",
+   "parallelization=hybrid",
+   "netcdf=yes",
+   "hdf5=yes",
+   "commThread=yes",
+   "compiler=gcc",
+   "unitTests=fast",
+   "-j8",
+  ]
+}
+
+action "download files"{
+  needs = "build and test"
+  uses = "./actions/seissol"
+  runs = ["sh", "-c", "workflows/tpv33/scripts/download.sh"]
+}
+
+action "execute"{
+  needs = "download files"
+  uses = "./actions/seissol"
+  runs = ["sh", "-c","workflows/tpv33/scripts/execute.sh"]
+}

workflows/tpv33/scripts/download.sh

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+#!/usr/bin/env bash
+set -e
+
+mkdir -p workflows/tpv33/tpv33-files
+curl -o workflows/tpv33/tpv33-files/tpv33_gmsh.xdmf https://syncandshare.lrz.de/dl/fiEi52Xiwwqkf2sNpTrCHjhw/tpv33_gmsh.xdmf
+curl -o workflows/tpv33/tpv33-files/Examples.tar.gz "https://codeload.github.com/SeisSol/Examples/tar.gz/master"
+curl -o workflows/tpv33/tpv33-files/tpv33_gmsh https://syncandshare.lrz.de/dl/fi72mQiszp6vSs7qN8tdZJf9/tpv33_gmsh
+
+tar -xzf workflows/tpv33/tpv33-files/Examples.tar.gz -C workflows/tpv33/tpv33-files
+
+mkdir -p seissol/launch_SeisSol
+cp workflows/tpv33/tpv33-files/tpv33_gmsh* seissol/launch_SeisSol
+cp seissol/build/SeisSol_release_generatedKernels_dnoarch_hybrid_none_9_6 seissol/launch_SeisSol/
+cp workflows/tpv33/tpv33-files/Examples-master/tpv33/* seissol/launch_SeisSol
+echo $PWD/Maple/ > seissol/launch_SeisSol/DGPATH

workflows/tpv33/scripts/execute.sh

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+#!/usr/bin/env bash
+
+cd seissol/launch_SeisSol
+OMP_NUM_THREADS=1 mpiexec --allow-run-as-root --oversubscribe -np 1 ./SeisSol_release_generatedKernels_dnoarch_hybrid_none_9_6 parameters_tpv33_master.par