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The Big Merge #30

Merged
merged 129 commits into from
Mar 14, 2022
Merged

The Big Merge #30

merged 129 commits into from
Mar 14, 2022

Commits on Dec 19, 2020

  1. fix import

    @kkrempl
    kkrempl committed Dec 19, 2020
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  2. fix import

    @kkrempl
    kkrempl committed Dec 19, 2020
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Commits on Jan 8, 2021

  1. pkl readers

    @kkrempl
    kkrempl committed Jan 8, 2021
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  2. Merge remote-tracking branch 'origin/reader_for_biologic_mpt' into de… 

    …convolution

Adding newest readers to deconvolution development
    @kkrempl
    kkrempl committed Jan 8, 2021
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Commits on Jan 9, 2021

  1. EC_MS .pkl reader

    @kkrempl
    kkrempl committed Jan 9, 2021
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Commits on Jan 24, 2021

  1. Implementation of the deconvolution class and further functionality.

    @kkrempl
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Commits on Jan 25, 2021

  1. Syntax correction of comments

    @kkrempl
    kkrempl committed Jan 25, 2021
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Commits on Jan 26, 2021

  1. Better formatting, added TODOs, smaller bug fixes

    @kkrempl
    kkrempl committed Jan 26, 2021
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  2. More TODOs

    @kkrempl
    kkrempl committed Jan 26, 2021
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Commits on Jan 28, 2021

  1. Even more TODOs

    @kkrempl
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Commits on Jan 31, 2021

  1. small bug fixes

    @kkrempl
    kkrempl committed Jan 31, 2021
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Commits on Feb 2, 2021

  1. bug fixes, now able to run scripts for paper

    @kkrempl
    kkrempl committed Feb 2, 2021
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  2. change docstring

    @kkrempl
    kkrempl committed Feb 2, 2021
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  3. Merge branch 'ec_features' of https://github.com/ixdat/ixdat into dec… 

    …onvolution
    @kkrempl
    kkrempl committed Feb 2, 2021
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  4. delete merge conflicts

    @kkrempl
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Commits on Feb 7, 2021

  1. Merge branch 'ec_features' into deconvolution_sbs 

    Soren implentnting a few fixes of his work where it's available to the
deconvolution work. This merge mainly brings over TODO's added in
response to WS3 and first review of #6.
    @ScottSoren
    ScottSoren committed Feb 7, 2021
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  2. pass cls from M.read() via R.read() to M.from_dict()

    @ScottSoren
    ScottSoren committed Feb 7, 2021
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  3. update requirements and appease flake8

    @ScottSoren
    ScottSoren committed Feb 7, 2021
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  4. rename 'get_' methods for t, v vectors to 'grab_'

    @ScottSoren
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Commits on Feb 15, 2021

  1. Merge pull request #7 from ixdat/deconvolution_sbs 

    Minor improvements after DWS3 and first #6 rev.
    @kkrempl
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  2. small changes for NH3 measurements

    @kkrempl
    kkrempl committed Feb 15, 2021
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  3. Merge branch 'deconvolution' of https://github.com/ixdat/ixdat into d… 

    …econvolution
    @kkrempl
    kkrempl committed Feb 15, 2021
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Commits on Feb 16, 2021

  1. write placeholder zilien Reader and ecms Plotter

    @ScottSoren
    ScottSoren committed Feb 16, 2021
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  2. Add MSPlotter, improve EC-MS related docstrings

    @ScottSoren
    ScottSoren committed Feb 16, 2021
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  3. start updating documentation

    @ScottSoren
    ScottSoren committed Feb 16, 2021
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  4. fix documentation formatting

    @ScottSoren
    ScottSoren committed Feb 16, 2021
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  5. add read_url() method to Measurement

    @ScottSoren
    ScottSoren committed Feb 16, 2021
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  6. updates for pypi: *$ pip install ixdat*

    @ScottSoren
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Commits on Feb 18, 2021

  1. add ECMeasurements.select_sweep and constants.py

    @ScottSoren
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  2. integrate() and grab_of_t()

    Scott committed Feb 18, 2021
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  3. implement CyclicVoltammagramDiff and CVDiffPlotter

    Scott committed Feb 18, 2021
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  4. minor improvements for tutorials, black formatting

    @ScottSoren
    ScottSoren committed Feb 18, 2021
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Commits on Feb 19, 2021

  1. ixdat csv reader, debugged for EC

    @ScottSoren
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  2. v0.0.5, minor debugging for csv of ec data

    @ScottSoren
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  3. base plotter, integrate() takes axis argument

    @ScottSoren
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  4. move higher saveable stuff to projects, v0.0.6

    @ScottSoren
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Commits on Feb 24, 2021

  1. autolab reader: tstamp stuff to reading_tools.py

    @ScottSoren
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Commits on Mar 9, 2021

  1. write ivium reader and organize things a bit

    @ScottSoren
    ScottSoren committed Mar 9, 2021
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Commits on Mar 10, 2021

  1. pfeiffer reader for ms and dataframe function

    @ScottSoren
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  2. implement review/debugging from PR #8

    @ScottSoren
    ScottSoren committed Mar 10, 2021
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Commits on Mar 11, 2021

  1. catching up documentation!

    @ScottSoren
    ScottSoren committed Mar 11, 2021
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Commits on Mar 12, 2021

  1. improve documentation

    @ScottSoren
    ScottSoren committed Mar 12, 2021
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Commits on Mar 13, 2021

  1. Write cinfdata text reader

    @ScottSoren
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  2. Hyphenating with '+' operator! two-axis EC-MS plot!

    @ScottSoren
    ScottSoren committed Mar 13, 2021
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Commits on Mar 17, 2021

  1. debug measurement appending+hyphenating, improve plotters

    @ScottSoren
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  2. ECMSCyclicVoltammagram and plot_vs_potential for EC-MS

    @ScottSoren
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  3. bg in plots, both EC and MS __init__'s called in EC-MS

    @ScottSoren
    ScottSoren committed Mar 17, 2021
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Commits on Mar 18, 2021

  1. EC-MS exporting and saving

    @ScottSoren
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  2. update docs, v0.0.10

    @ScottSoren
    ScottSoren committed Mar 18, 2021
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Commits on Mar 22, 2021

  1. debugging: biologic encoding, EC-MS component_measurements, sel_str o… 

    …verwrite
    @ScottSoren
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Commits on Mar 23, 2021

  1. debug for all EC + MS reader combos

    @ScottSoren
    ScottSoren committed Mar 23, 2021
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  2. zilien tmp reader

    @ScottSoren
    ScottSoren committed Mar 23, 2021
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Commits on Apr 14, 2021

  1. fix duplicate Ewe/V and I/mA in EC_MS imports bug

    @ScottSoren
    ScottSoren committed Apr 14, 2021
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Commits on Apr 15, 2021

  1. write internal and semiinternal calibration functions

    @ScottSoren
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  2. Saveable (actually, exportable) EC-MS calibration

    @ScottSoren
    ScottSoren committed Apr 15, 2021
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  3. full calibrated EC-MS plotting functionality

    @ScottSoren
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  4. v0.1.0

    @ScottSoren
    ScottSoren committed Apr 15, 2021
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Commits on Apr 21, 2021

  1. minor debug of ecms plotting, write grab_flux_for_t

    @ScottSoren
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  2. more (messy) calibration integration, v0.1.1

    @ScottSoren
    ScottSoren committed Apr 21, 2021
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Commits on Apr 28, 2021

  1. import .mpt files with sub-second timestamps

    @ScottSoren
    ScottSoren committed Apr 28, 2021
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Commits on Apr 29, 2021

  1. write Spectrum class and zilien spectrum reader

    @ScottSoren
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Commits on Apr 30, 2021

  1. fix spectrum for backend, write docstrings

    @ScottSoren
    ScottSoren committed Apr 30, 2021
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Commits on Jul 1, 2021

  1. msrh spectroelectrochemistry reader

    @ScottSoren
    ScottSoren committed Jul 1, 2021
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  2. spectroelectrochemistry plotting

    @ScottSoren
    ScottSoren committed Jul 1, 2021
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  3. v0.1.4sec

    @ScottSoren
    ScottSoren committed Jul 1, 2021
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Commits on Jul 2, 2021

  1. major update to documentation

    @ScottSoren
    ScottSoren committed Jul 2, 2021
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  2. more improvement in docs including tutorials

    @ScottSoren
    ScottSoren committed Jul 2, 2021
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  3. logo in docs, updated README, v0.1.5

    @ScottSoren
    ScottSoren committed Jul 2, 2021
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  4. fix logo paths

    @ScottSoren
    ScottSoren committed Jul 2, 2021
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Commits on Jul 10, 2021

  1. SpectrumSeries

    @ScottSoren
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Commits on Jul 11, 2021

  1. sec plot_vs_potential; use SpectrumSeriesPlotter

    @ScottSoren
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  2. SEC potential decay

    @ScottSoren
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Commits on Jul 12, 2021

  1. fix sign issue and v direction in sec

    @ScottSoren
    ScottSoren committed Jul 12, 2021
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Commits on Jul 13, 2021

  1. set_reference_spectrum(); doc strings for S-EC.

    @ScottSoren
    ScottSoren committed Jul 13, 2021
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  2. sec exporter

    @ScottSoren
    ScottSoren committed Jul 13, 2021
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  3. IxdatCSVReader can read sec with aux files

    @ScottSoren
    ScottSoren committed Jul 13, 2021
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  4. sec track wavelengths

    @ScottSoren
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Commits on Jul 16, 2021

  1. finish docstrings for sec

    @ScottSoren
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  2. Merge branch 'user_ready' into spectroelectrochemistry 

    Need the documentation updates on user_ready to add
spectroelectrochemistry to
    @ScottSoren
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  3. spectra and SEC documentation

    @ScottSoren
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Commits on Jul 17, 2021

  1. sphinx instructions in tools.rst, ready for PR

    @ScottSoren
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Commits on Nov 8, 2021

  1. implement Caiwu's review of spectroelectrochemistry

    @ScottSoren
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Commits on Nov 9, 2021

  1. Merge pull request #13 from ixdat/spectroelectrochemistry 

    Spectroelectrochemistry
    Søren Bertelsen Scott committed Nov 9, 2021
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  2. clean up documentation

    ScottSoren committed Nov 9, 2021
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  3. fix rtd error

    ScottSoren committed Nov 9, 2021
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  4. ------ ixdat v0.1.5 --------

    @ScottSoren
    ScottSoren authored and ScottSoren committed Nov 9, 2021
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Commits on Nov 21, 2021

  1. RGA and CHI readers (using EC_MS)

    @ScottSoren
    ScottSoren committed Nov 21, 2021
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  2. lookup and export of molar fluxes

    @ScottSoren
    ScottSoren committed Nov 21, 2021
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  3. MSCalResults in mol_lists, correct_data (for pyOER)

    @ScottSoren
    ScottSoren committed Nov 21, 2021
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Commits on Nov 24, 2021

  1. return J_str, V_str; bg removal for flux

    @ScottSoren
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  2. Import zilien .tsv without EC (Issues #17 and #20)

    @ScottSoren
    ScottSoren committed Nov 24, 2021
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  3. fix plot_vs_potential axes (Issues #16 and #19)

    @ScottSoren
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Commits on Nov 26, 2021

  1. update docs, ----- ixdat v0.1.6 -----

    @ScottSoren
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Commits on Dec 2, 2021

  1. Merge pull request #21 from ixdat/Fuzhou 

    Additions for smoother EC-MS functionality
    Søren Bertelsen Scott committed Dec 2, 2021
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  2. merge (no fixing yet)

    @ScottSoren
    ScottSoren committed Dec 2, 2021
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  3. black format, pass checksgit add .!

    @ScottSoren
    ScottSoren committed Dec 2, 2021
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  4. debug for test_zilien_reader

    @ScottSoren
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Commits on Dec 6, 2021

  1. update __init__.py: aiming for v0.2.0

    @ScottSoren
    ScottSoren committed Dec 6, 2021
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  2. debug for ivium reader

    @ScottSoren
    ScottSoren committed Dec 6, 2021
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  3. mass_aliases are just aliases.

    @ScottSoren
    ScottSoren committed Dec 6, 2021
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  4. signal_bgs and ms_cal_ist in MSCalibration

    @ScottSoren
    ScottSoren committed Dec 6, 2021
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  5. debug autolab: cycle not essential to ECMeasurement

    @ScottSoren
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  6. debug msrh_sec: series_list before aliases.

    @ScottSoren
    ScottSoren committed Dec 6, 2021
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  7. debug msrh_sec_decay

    @ScottSoren
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  8. debug ixdat csv exporters and ixdat reader

    @ScottSoren
    ScottSoren committed Dec 6, 2021
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Commits on Dec 7, 2021

  1. debug for Huang2021: ECMSCalibration inheritance

    @ScottSoren
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  2. flux calculation in MSCalibration.get_series

    @ScottSoren
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  3. pacify flake8, pass checks

    @ScottSoren
    ScottSoren committed Dec 7, 2021
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Commits on Feb 3, 2022

  1. new biologic timestamp form (#33)

    ScottSoren committed Feb 3, 2022
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  2. tspan_bg not t_bg (#27)

    ScottSoren committed Feb 3, 2022
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  3. Voltammogram not Voltammagram (#23)

    ScottSoren committed Feb 3, 2022
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  4. Zilien as EC-MS, EC, or MS (#32)

    ScottSoren committed Feb 3, 2022
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  5. ---- ixdat v0.1.7 ------

    ScottSoren committed Feb 3, 2022
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  6. Merge branch 'user_ready' into backend_fixes 

    This incorporates fixes to several recent issues,
fixed for ixdat v0.1.7, just released from [user_ready]
    ScottSoren committed Feb 3, 2022
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Commits on Feb 6, 2022

  1. -- v0.1.8 -- fix ECMSCyclicVoltammogram inheritance

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    ScottSoren committed Feb 6, 2022
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  2. merge ixdat v0.1.8

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    ScottSoren committed Feb 6, 2022
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Commits on Feb 16, 2022

  1. debug spectrum loading: fields as child_attrs

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    ScottSoren committed Feb 16, 2022
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Commits on Feb 18, 2022

  1. fix CyclicVoltammogram

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    ScottSoren committed Feb 18, 2022
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Commits on Mar 9, 2022

  1. aliases in EC_MS pickle importer

    @ScottSoren
    ScottSoren committed Mar 9, 2022
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  2. implement review outside of src

    @ScottSoren
    ScottSoren committed Mar 9, 2022
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  3. physical constants from scipy

    @ScottSoren
    ScottSoren committed Mar 9, 2022
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  4. implement review of db and data_series

    @ScottSoren
    ScottSoren committed Mar 9, 2022
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Commits on Mar 11, 2022

  1. implement review of exporters

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    ScottSoren committed Mar 11, 2022
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Commits on Mar 13, 2022

  1. implement review of measurement.py

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    ScottSoren committed Mar 13, 2022
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  2. implement review of plotters

    @ScottSoren
    ScottSoren committed Mar 13, 2022
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  3. implement review of readers

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    ScottSoren committed Mar 13, 2022
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  4. implement review of spectra.py

    @ScottSoren
    ScottSoren committed Mar 13, 2022
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  5. implement review of techniques

    @ScottSoren
    ScottSoren committed Mar 13, 2022
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Commits on Mar 14, 2022

  1. finish review: ECMS axes order and misc details

    ScottSoren committed Mar 14, 2022
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