Merge b4c3e8d into f2c3df1

j-faria · Dec 18, 2019 · fe33adc · fe33adc
2 parents f2c3df1 + b4c3e8d
commit fe33adc
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diff --git a/.github/workflows/test_suite.yml b/.github/workflows/test_suite.yml
@@ -0,0 +1,78 @@
+name: CI
+
+on: [push]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+
+    steps:
+
+    - uses: actions/checkout@v2
+    - name: Checkout submodules
+      shell: bash
+      run: |
+        auth_header="$(git config --local --get http.https://github.com/.extraheader)"
+        git submodule sync --recursive
+        git -c "http.extraheader=$auth_header" -c protocol.version=2 submodule update --init --force --recursive --depth=1
+
+    - name: Install anaconda
+      run: |
+        wget http://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda.sh;
+        bash ~/miniconda.sh -b -p $HOME/miniconda
+        export PATH="$HOME/miniconda/bin:$PATH"
+        conda config --set always_yes yes --set changeps1 no
+        conda update -q conda
+        conda install nomkl numpy scipy matplotlib
+        pip install corner
+
+    - name: Install kima and pykima
+      run: |
+        export PATH="$HOME/miniconda/bin:$PATH"
+
+        make -j 4
+        python setup.py install
+
+
+    # - name: Start the tests
+    #   run: |
+    #     pwd
+    #     cd tests/test_suite
+
+    - name: Run 51Peg example
+      run: |
+        export PATH="$HOME/miniconda/bin:$PATH"
+        cd tests/test_suite
+        cp OPTIONS ../../examples/51Peg/OPTIONS
+        kima-run ../../examples/51Peg -s 43
+        # test the output
+        echo "Comparing output to known output for seed"
+        cmp 51Peg_sample_seed43.txt ../../examples/51Peg/sample.txt
+
+    - name: Run CoRoT7 example
+      run: |
+        export PATH="$HOME/miniconda/bin:$PATH"
+        cd tests/test_suite
+        cp OPTIONS ../../examples/CoRoT7/OPTIONS
+        kima-run ../../examples/CoRoT7 -s 43
+        # test the output
+        echo "Comparing output to known output for seed"
+        cmp CoRoT7_sample_seed43.txt ../../examples/CoRoT7/sample.txt
+
+
+    - name: Run BL2009 example
+      run: |
+        export PATH="$HOME/miniconda/bin:$PATH"
+        cd tests/test_suite
+        cp OPTIONS ../../examples/BL2009/OPTIONS
+        kima-run ../../examples/BL2009 -s 43
+        # test the output
+        echo "Comparing output to known output for seed"
+        cmp BL2009_sample_seed43.txt ../../examples/BL2009/sample.txt
+
+
+    # - name: Run a multi-line script
+    #   run: |
+    #     echo Add other actions to build,
+    #     echo test, and deploy your project.
diff --git a/tests/test_suite/51Peg_sample_seed43.txt b/tests/test_suite/51Peg_sample_seed43.txt
@@ -0,0 +1,101 @@
+# extra_sigma   ndim   maxNp   Np   P   K   phi   ecc   w   staleness   vsys
+6.84699030	5 1  1 1260.48745184 22.50793445 3.43870501 0.12233073 4.01786854  0 7.95951710
+2.69856512	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 -1.76429492
+220.67265131	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 -0.26776540
+5.27866317	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 1.80625501
+4.68661951	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 -1.81859891
+4.68661951	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 -1.55263722
+318.98555389	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 1.90445538
+220.67265133	5 1  1 10.48461936 13.70154006 3.85357995 0.94095716 2.94478799  0 -0.26776540
+30.02983449	5 1  1 0.36037864 0.63433927 2.25454923 0.00899879 1.66466029  0 -4.78840838
+220.67265133	5 1  1 10.48461936 13.70154006 3.85357995 0.94095716 2.94478799  0 -0.27704952
+17.69056733	5 1  1 10.48893529 0.88614711 5.82039711 0.45629666 2.94497426  0 -0.27704952
+62.63329415	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 -6.02224391
+30.02983449	5 1  1 0.36037864 0.63433927 2.25454923 0.00899879 1.66466029  0 -4.71837398
+62.63329415	5 1  1 468.37105268 2.59150069 1.83909252 0.78955952 3.91718767  1 -6.32988628
+5.07139047	5 1  1 643.61918760 65.64197254 3.85215499 0.69753390 2.26776982  0 -2.07139025
+5.07139047	5 1  1 643.10736261 3.49023541 6.18515506 0.69498469 4.49656982  0 -2.07139025
+25.49853528	5 1  1 17.50925912 858.87423833 0.43618914 0.87817017 0.31725489  1 -6.23626802
+120.37837215	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 -1.47136214
+0.56343166	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 6.19334032
+62.63329415	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 -6.32988628
+62.63329415	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 -6.21670256
+173.60388298	5 1  1 12.39417221 3.33181498 1.60960069 0.15565905 2.19404586  0 -1.98605117
+403.09434805	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 -6.23583011
+0.47238325	5 1  1 154.74191593 907.72503735 2.15881826 0.56358775 3.06646250  0 0.43003653
+9.44267279	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 9.10279762
+174.30488627	5 1  1 4.57606874 0.16160818 1.04428960 0.32319518 0.11937939  0 -7.41977758
+478.45139427	5 1  1 197.64812837 34.41265906 3.46342722 0.20070181 5.56911560  0 -5.19682572
+0.00346893	5 1  1 0.34868387 424.64581232 3.35674573 0.55013052 0.21814488  0 0.40840826
+147.25811201	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 -2.70724674
+666.14835499	5 1  1 0.35224009 424.64693946 0.27400397 0.98856354 0.54702229  0 0.40840826
+9.45087571	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 2.09856660
+1.86515896	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 2.33083100
+9.70391656	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 5.28355294
+97.39142392	5 1  1 169.62763757 108.94778414 5.08301398 0.34998858 0.81027776  0 0.40580343
+474.15399787	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 5.28430306
+147.25811201	5 1  1 1.40078778 18.41561285 4.78421056 0.24932581 5.75672018  0 -5.14633304
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+3.93202287	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 -9.77900772
+3.05146238	5 1  1 429.97351394 1.10060132 1.94526367 0.72769143 3.88732991  0 3.49217939
+171.63850977	5 1  1 69.50430499 76.71377493 5.03406899 0.47496608 1.35198201  0 3.47247240
+3.05151134	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 6.70525958
+469.41730926	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 7.92701119
+98.06500449	5 1  1 3.09702027 15.15835118 5.52596352 0.42792515 2.44830114  1 -7.41279102
+430.71995658	5 1  1 6.02340035 21.62414133 1.30281580 0.45313699 5.77505636  0 1.87794820
+430.71995658	5 1  1 459.54695702 34.57369044 1.30286513 0.44368586 5.77506170  0 1.87794820
+5.44609458	5 1  1 5.15005449 17.50521665 3.80847446 0.29545991 4.96743148  1 6.36193569
+171.63850977	5 1  1 159.15030409 103.32791564 4.93716820 0.30644453 0.02219662  0 2.55727818
+463.65753139	5 1  0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000  0 8.47824589
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+461.48458936	5 1  1 0.67625557 83.34699698 0.29106891 0.31572352 4.27227357  1 8.47824589
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+15.36304653	5 1  1 16.59837434 14.71256270 4.41350020 0.95619336 5.68026918  1 -4.66461265
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+472.38988487	5 1  1 17.51896860 5.59341811 1.58655636 0.81710276 3.40107255  0 -5.27571324
+10.35328071	5 1  1 17.85215678 428.55812471 3.42280134 0.96237267 5.55535774  0 -2.31802896
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