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JSmol.lite.nojq.js
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JSmol.lite.nojq.js
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this.container.unbind("touchendoutjsmol");a._setMouseOwner(null);if(b){var e=this;this.container.bind("mousemoveoutjsmol touchmoveoutjsmol",function(b,a,f){e.mouseMove(f)});this.container.bind("mouseupoutjsmol touchendoutjsmol",function(b,a,f){e.mouseUp(f)})}})};k.JSDialog=function(){};k.setDraggable(k.JSDialog);k.getScreenDimensions=function(b){b.width=h(window).width();b.height=h(window).height()};k.dispose=function(b){a.$remove(b.id+"_mover");delete k.htDialogs[b.id];b.container.obj.dragBind(!1)};
k.register=function(b,a){b.id=a+ ++k.count;k.htDialogs[b.id]=b};k.setDialog=function(b){a._setMouseOwner(null);a.$remove(b.id);var e=b.id+"_mover",c=a._$(e),d;c[0]?(c.html(b.html),d=c[0].jd):(a.$after("body","<div id='"+e+"' style='position:absolute;left:0px;top:0px;'>"+b.html+"</div>"),d=new k.JSDialog,c=a._$(e),b.container=c,d.applet=b.manager.vwr.html5Applet,d.setContainer(c),d.dialog=b,d.setPosition(),d.dragBind(!0),c[0].jd=d);a.$bind("#"+b.id+" .JButton","mousedown touchstart",function(){d.ignoreMouse=
!0});a.$bind("#"+b.id+" .JComboBox","mousedown touchstart",function(){d.ignoreMouse=!0});a.$bind("#"+b.id+" .JCheckBox","mousedown touchstart",function(){d.ignoreMouse=!0});a.$bind("#"+b.id+" .JTextField","mousedown touchstart",function(){d.ignoreMouse=!0});a.$bind("#"+b.id+" .JTable","mousedown touchstart",function(){d.ignoreMouse=!0});a.$bind("#"+b.id+" .JScrollPane","mousedown touchstart",function(){d.ignoreMouse=!0});a.$bind("#"+b.id+" .JEditorPane","mousedown touchstart",function(){d.ignoreMouse=
!0})};k.setSelected=function(b){a.$prop(b.id,"checked",!!b.selected)};k.setSelectedIndex=function(b){a.$prop(b.id,"selectedIndex",b.selectedIndex)};k.setText=function(b){a.$prop(b.id,"value",b.text)};k.setVisible=function(b){a.$setVisible(b.id,b.visible)};k.setEnabled=function(b){a.$setEnabled(b.id,b.enabled)};k.click=function(b,e){var c=k.htDialogs[b.id];if(c){var d=c.toString();if(0<=d.indexOf("JCheck"))c.selected=b.checked;else if(0<=d.indexOf("JCombo"))c.selectedIndex=b.selectedIndex;else if(null!=
c.text&&(c.text=b.value,e&&13!=(e.charCode||e.keyCode)))return}d=k.htDialogs[a.$getAncestorDiv(b.id,"JDialog").id];d.manager.actionPerformed(c?c.name:d.registryKey+"/"+b.id)};k.setFront=function(b){var e=b.manager.vwr.html5Applet;b.zIndex!=a._getZ(e,"dialog")&&(b.zIndex=a._incrZ(e,"dialog"));b.container&&((b.container[0]||b.container).style.zIndex=b.zIndex)};k.hideMenus=function(b){if(b=b._menus)for(var a in b)b[a].visible&&k.hideMenu(b[a])};k.windowClosing=function(b){b=k.htDialogs[a.$getAncestorDiv(b.id,
"JDialog").id];b.registryKey?b.manager.processWindowClosing(b.registryKey):b.dispose()};a._track=function(b){if(a._tracker){try{var e='<iframe style="display:none" width="0" height="0" frameborder="0" tabindex="-1" src="'+(a._tracker+"&applet="+b._jmolType+"&version="+a._version+"&appver="+a.___JmolVersion+"&url="+encodeURIComponent(document.location.href))+'"></iframe>';a.$after("body",e)}catch(c){}delete a._tracker}return b};var l;a.getProfile=function(b){if(self.Clazz&&self.JSON)return l||Clazz._startProfiling(l=
0==arguments.length||b),Clazz.getProfile()};a._getInChIKey=function(b,a){0<=a.indexOf("MOL=")&&a.split("MOL=")[1].split('"')};a._getAttr=function(b,a){var e=b.indexOf(a+"=");return 0<=e&&0<=(e=b.indexOf('"',e))?b.substring(e+1,b.indexOf('"',e+1)):null};a.User={viewUpdatedCallback:null};a.View={count:0,applets:{},sets:{}};(function(b){b.updateView=function(e,c){if(null!=e._viewSet){c.chemID||(e._searchQuery=null);c.data||(c.data="N/A");c.type=e._viewType;if(null==(e._currentView=b.__findView(e._viewSet,
c)))e._currentView=b.__createViewSet(e._viewSet,c.chemID,c.viewID||c.chemID);e._currentView[c.type].data=c.data;e._currentView[c.type].smiles=e._getSmiles();a.User.viewUpdatedCallback&&a.User.viewUpdatedCallback(e,"updateView");b.__setView(e._currentView,e,!1)}};b.updateFromSync=function(e,c){e._updateMsg=c;var d=a._getAttr(c,"sourceID")||a._getAttr(c,"file");if(d){var g=b.__findView(e._viewSet,{viewID:d});if(null==g)return a.updateView(e,c);g!=e._currentView&&b.__setView(g,e,!0);var h=(d=a._getAttr(c,
"atoms"))&&0<=c.indexOf("selectionhalos ON")?eval("["+d+"]"):[];setTimeout(function(){e._currentView==g&&b.updateAtomPick(e,h)},10);a.User.viewUpdatedCallback&&a.User.viewUpdatedCallback(e,"updateFromSync")}};b.updateAtomPick=function(b,e){var d=b._currentView;if(null!=d){for(var g in d)"info"!=g&&d[g].applet!=b&&d[g].applet._updateAtomPick(e);a.User.viewUpdatedCallback&&a.User.viewUpdatedCallback(b,"updateAtomPick")}};b.dumpViews=function(a){var e=b.sets[a];if(e){var d="View set "+a+":\n";a=b.applets[a];
for(var g in a)d+="\napplet "+a[g]._id+" currentView="+(a[g]._currentView?a[g]._currentView.info.viewID:null);for(g=e.length;0<=--g;){a=e[g];var d=d+("\n\n<b>view="+g+" viewID="+a.info.viewID+" chemID="+a.info.chemID+"</b>\n"),h,m;for(m in a)"info"!=m&&(d+="\nview="+g+" type="+m+" applet="+((h=a[m]).applet?h.applet._id:null)+" SMILES="+h.smiles+"\n atomMap="+JSON.stringify(h.atomMap)+"\n data=\n"+h.data+"\n")}return d}};b.__init=function(a){var e=a._viewSet,d=b.applets;d[e]||(d[e]={});d[e][a._viewType]=
a};b.__findView=function(a,e){var d=b.sets[a];null==d&&(d=b.sets[a]=[]);for(var g=d.length;0<=--g;){var h=d[g];if(e.viewID){if(h.info.viewID==e.viewID)return h}else{if(null!=e.chemID&&e.chemID==h.info.chemID)return h;for(var m in h)if("info"!=m&&(null!=e.data&&null!=h[m].data?e.data==h[m].data:e.type==m))return h}}return null};b.__createViewSet=function(e,c,d){b.count++;c={info:{chemID:c,viewID:d||"model_"+b.count}};for(var g in a._applets)d=a._applets[g],d._viewSet==e&&(c[d._viewType]={applet:d,
data:null});b.sets[e].push(c);return c};b.__setView=function(b,a,e){for(var d in b)if("info"!=d){var g=b[d],h=g.applet,m=e||null!=h&&"<modified>"==h._molData;if(!(null==h||h==a&&!m)){var j=null==g.data,k=null!=h._currentView;h._currentView=b;if(!k||!(b[d].data==g.data&&!j&!m))if(h._loadModelFromView(b),j)break}}}})(a.View);a.Cache={fileCache:{}};a.Cache.get=function(b){return a.Cache.fileCache[b]};a.Cache.put=function(b,e){a.Cache.fileCache[b]=e};a.Cache.setDragDrop=function(b){a.$appEvent(b,"appletdiv",
"dragover",function(b){b=b.originalEvent;b.stopPropagation();b.preventDefault();b.dataTransfer.dropEffect="copy"});a.$appEvent(b,"appletdiv","drop",function(e){var c=e.originalEvent;c.stopPropagation();c.preventDefault();var d=c.dataTransfer.files[0];if(null==d)try{d=""+c.dataTransfer.getData("text"),(0==d.indexOf("file:/")||0==d.indexOf("http:/"))&&b._scriptLoad(d)}catch(g){}else c=new FileReader,c.onloadend=function(c){if(c.target.readyState==FileReader.DONE){var g="cache://DROP_"+d.name;c=Clazz.newByteArray(-1,
c.target.result);g.endsWith(".spt")||b._appletPanel.cacheFileByName("cache://DROP_*",!1);"JSV"==b._viewType||g.endsWith(".jdx")?a.Cache.put(g,c):b._appletPanel.cachePut(g,c);(c=a._jsGetXY(b._canvas,e))&&(!b._appletPanel.setStatusDragDropped||b._appletPanel.setStatusDragDropped(0,c[0],c[1],g))&&b._appletPanel.openFileAsyncSpecial(g,1)}},c.readAsArrayBuffer(d)})}})(Jmol,jQuery);Jmol._debugCode=!1;Jmol._grabberOptions=[["$","NCI(small molecules)"],[":","PubChem(small molecules)"]];Jmol.say=function(a){alert(a)};
Jmol._TMApplet=function(a,h,e){this._uniqueId=(""+Math.random()).substring(3);this._id=a;this._is2D=!0;this._isJava=!1;this._ready=!0;this._mouseDown=!1;this._jmolType="Jmol._Canvas2D (TwirlyMol)";if(e)return this;this._createCanvas(a,h);return this};
Jmol._TMApplet._getApplet=function(a,h,e){if(!Jmol.featureDetection.allowHTML5)return null;e||(e=!1);h||(h={});Jmol._addDefaultInfo(h,{color:"#FFFFFF",width:300,height:300,addSelectionOptions:!1,serverURL:"http://your.server.here/jsmol.php",defaultModel:"",readyFunction:null,use:"HTML5",bondWidth:5,shadeAtoms:!1,zoomScaling:1.5,pinchScaling:2,mouseDragFactor:0.5,touchDragFactor:0.15,multipleBondSpacing:4,spinRateX:0,spinRateY:0.5,spinFPS:20,spin:!1,noscript:!0,debug:!1});h=new Jmol._TMApplet(a,h,
e);return e?h:Jmol._registerApplet(a,h)};Jmol.getTMApplet=Jmol._TMApplet._getApplet;
(function(a){a._CPK="#FF1493 #FFFFFF #D9FFFF #CC80FF #C2FF00 #FFB5B5 #909090 #3050F8 #FF0D0D #90E050 #B3E3F5 #AB5CF2 #8AFF00 #BFA6A6 #F0C8A0 #FF8000 #FFFF30 #1FF01F #80D1E3 #8F40D4 #3DFF00 #E6E6E6 #BFC2C7 #A6A6AB #8A99C7 #9C7AC7 #E06633 #F090A0 #50D050 #C88033 #7D80B0 #C28F8F #668F8F #BD80E3 #FFA100 #A62929 #5CB8D1 #702EB0 #00FF00 #94FFFF #94E0E0 #73C2C9 #54B5B5 #3B9E9E #248F8F #0A7D8C #006985 #C0C0C0 #FFD98F #A67573 #668080 #9E63B5 #D47A00 #940094 #429EB0 #57178F #00C900".split(" ");a._elem="X H He Li Be B C N O F Ne Na Mg Al Si P S Cl Ar K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr Rb Sr Y Zr Nb Mo Tc Ru Rh Pd Ag Cd In Sn Sb Te I Xe Cs Ba La Ce Pr Nd Pm Sm Eu Gd Tb Dy Ho Er Tm Yb Lu Hf Ta W Re Os Ir Pt Au Hg Tl Pb Bi Po At Rn Fr Ra Ac Th Pa U Np Pu Am Cm Bk Cf Es".split(" ");
a._elemNo={};var h=a.prototype;h.spin=function(a){this.__Info.spin=a;this._spin(a)};h._spin=function(a){this._spinThread&&clearTimeout(this._spinThread);if(0==this.spinFPS||0==this.spinRateX&&0==this.spinRateY)a=!1;if(a){var d=this;a=1E3/this.spinFPS;this._mouseDown||(this._rotate(this.spinRateY,this.spinRateX),this._draw());this._spinThread=setTimeout(function(){d._spin(!0)},a)}};h._initParams=function(){this.zoom=this.__Info.defaultZoom||100;this.doSpin=this.__Info.spin||!1;this.center2D=[this._canvas.width/
2,this._canvas.height/2,0];this._getCenterAndRadius();this.rotation=new a.M3;this.shadeAtoms=!1;this._setParams()};h._setParams=function(){this.bondWidth=this.__Info.bondWidth||5;this.zoomScaling=this.__Info.zoomScaling||1.5;this.pinchScaling=this.__Info.pinchScaling||1;this.mouseDragFactor=this.__Info.mouseDragFactor||0.5;this.touchDragFactor=this.__Info.touchDragFactor||0.15;this.multipleBondSpacing=this.__Info.multipleBondSpacing||4;this.spinRateX=this.__Info.spinRateX||0;this.spinRateY=this.__Info.spinRateY||
0;this.spinFPS=this.__Info.spinFPS||0;var a=this.shadeAtoms;(this.shadeAtoms=this.__Info.shadeAtoms||!1)&&!a&&this._setAtomShades()};h._setAtomShades=function(){if(this.atoms)for(var a=this.atoms.length;0<=--a;)this.atoms[a].color50=this._getColor(this.atoms[a].color,0.5)};h._createCanvas=function(a,d){Jmol._setObject(this,a,d);this._color=this._color.replace(/0x/,"#");var g=Jmol._getWrapper(this,!0);Jmol._document?(Jmol._documentWrite(g),this._createCanvas2d(!1),g=""):g+='<script type="text/javascript">'+
a+"._createCanvas2d(false)\x3c/script>";g+=Jmol._getWrapper(this,!1);d.addSelectionOptions&&(g+=Jmol._getGrabberOptions(this,""));Jmol._debugAlert&&!Jmol._document&&alert(g);this._code=Jmol._documentWrite(g)};h._createCanvas2d=function(a){var d=document.createElement("canvas"),g=Jmol.$(this,"appletdiv");a&&(g[0].removeChild(this._canvas),Jmol._jsUnsetMouse(this._canvas));a=Math.round(g.width());var h=Math.round(g.height());d.applet=this;this._canvas=d;d.style.width="100%";d.style.height="100%";d.width=
a;d.height=h;d.id=this._id+"_canvas2d";g.append(d);setTimeout(this._id+"._start()",10)};h._start=function(){Jmol._jsSetMouse(this._canvas);this._defaultModel?Jmol._search(this,this._defaultModel,this._readyScript?this._readyScript:""):this._src&&this._loadFile(this._src);this._showInfo(!0);this._showInfo(!1)};h._search=function(a,d){Jmol._search(this,a,d)};h._searchDatabase=function(a,d,g){this._showInfo(!1);0<=a.indexOf("?")?Jmol._getInfoFromDatabase(this,d,a.split("?")[0]):this._loadFile(d+a,g)};
h.__loadModel=function(a){this._spin(!1);"''"==a&&(a=this._mol);a?(this._parse(a),this._initParams(),this._draw(),this._showInfo(!1),this.doSpin&&this._spin(!0)):alert("No model data.")};h._showInfo=function(a){Jmol.$html(Jmol.$(this,"infoheaderspan"),this._infoHeader);this._info&&Jmol.$html(Jmol.$(this,"infodiv"),this._info);!this._isInfoVisible!=!a&&(this._isInfoVisible=a,Jmol.$setVisible(Jmol.$(this,"infotablediv"),a),Jmol.$setVisible(Jmol.$(this,"infoheaderdiv"),a),this._show(!a))};h._show=function(a){Jmol.$setVisible(Jmol.$(this,
"appletdiv"),a);a&&this._draw()};h._resize=function(){var a="__resizeTimeout_"+this._id;Jmol[a]&&clearTimeout(Jmol[a]);var d=this;Jmol[a]=setTimeout(function(){d._draw();Jmol[a]=null},100)};h._canScript=function(){return!0};h._script=function(a){for(var d=a.split(";"),g=0;g<d.length;g++)a=d[g].trim(),"image"==a?window.open(this._canvas.toDataURL("image/png")):0==a.indexOf("load ")?this._loadFile(a.substring(5).trim()):0==a.indexOf("spin ")&&this.spin(0>a.toLowerCase().indexOf("off"))};h._loadFile=
function(a){this._showInfo(!1);this._thisJmolModel=a;var d=this;Jmol._loadFileData(this,a,function(a){d.__loadModel(a)})};h._processEvent=function(a,d){switch(a){case 502:case 503:this._mouseDown=!1;default:return;case 501:this._mouseX=d[0];this._mouseY=d[1];this._mouseDown=!0;return;case 506:var g=d[0]-this._mouseX,h=d[1]-this._mouseY,g=0>g?-1:0<g?1:0,h=0>h?-1:0<h?1:0;switch(d[2]){case 17:this._zoomBy(h);break;case 24:this.center2D[0]+=g;this.center2D[1]+=h;break;default:this._rotate(g,h)}this._mouseX=
d[0];this._mouseY=d[1];break;case -1:this._zoomBy(d[1])}this._draw()};h._processGesture=function(e){if(!(2>e[0].length)){var d=e[0],g=e[1],h=d[0],j=d[g.length-1];e=h[0];var k=j[0],h=h[1],j=j[1],l=[k-e,j-h,0],b=a._length(l),f=g[0],c=g[g.length-1],g=f[0],q=c[0],f=f[1],c=c[1],p=[q-g,c-f,0],r=a._length(p);3>b||3>r||(a._scale(l,1/b),a._scale(p,1/r),l=a._dot(l,p),0.8<l?(e=Math.round(k-d[d.length-2][0]),d=Math.round(j-d[d.length-2][1]),this.center2D[0]+=e,this.center2D[1]+=d):-0.8>l&&(l=[g-e,f-h,0],p=[q-
k,c-j,0],d=a._length(p)-a._length(l),this.zoom+=(0>d?-1:1)*this.pinchScaling),this._draw())}};h._zoomBy=function(a){this.zoom+=a*this.zoomScaling;5>this.zoom&&(this.zoom=5);500<this.zoom&&(this.zoom=500)};h._getRotationScaling=function(){return[1/Math.max(this._canvas.width,500)*this.mouseDragFactor*a.deg_per_radian,1/Math.max(this._canvas.height,500)*this.mouseDragFactor*a.deg_per_radian]};h._rotate=function(e,d){var g=this._getRotationScaling();d&&(a._m3.rotX(d*g[1]),this.rotation.mul(a._m3));e&&
(a._m3.rotY(e*g[0]),this.rotation.mul(a._m3))};h._getCenterAndRadius=function(){Math.min(this._canvas.width,this._canvas.height);for(var e=[999999,999999,999999],d=[-999999,-999999,-999999],g=this.atoms.length;0<=--g;)for(var h=3;0<=--h;){var j=this.atoms[g].xyz[h];j<e[h]&&(e[h]=j);j>d[h]&&(d[h]=j)}j=[0,0,0];for(h=3;0<=--h;)j[h]=(d[h]+e[h])/2;e=0;for(g=this.atoms.length;0<=--g;)d=this.atoms[g],d=a._distance(d.xyz,j)+(1==d.elemNo?1:1.5),d>e&&(e=d);this.center=j;this.modelRadius=0==e?10:e};h._setScreenCoords=
function(){for(var a=this.center,d=this.rotation,g=this.center2D,h=Math.min(this._canvas.width,this._canvas.height)/2/this.modelRadius*this.zoom/100,j=this.atoms.length;0<=--j;){var k=this.atoms[j];this._transform(k.xyz,k.sxyz,a,d,h,g);k.srad=h*k.radius}for(j=this.bonds.length;0<=--j;)k=this.bonds[j],this._transform(k.xyz,k.sxyz,a,d,h,g),this._transform(k.pts[0],k.spts[0],a,d,h,g),this._transform(k.pts[1],k.spts[1],a,d,h,g)};h._transform=function(e,d,g,h,j,k){for(var l=a._temp1,b=a._temp2,f=3;0<=
--f;)l[f]=(e[f]-g[f])*j;h.transform(l,b);b[1]=-b[1];b[2]=-b[2];for(f=3;0<=--f;)d[f]=b[f]+k[f]};h._parse=function(a){this._parseSDF(a)};h._parseSDF=function(e){this._mol=e;if(!a._elemNo.H)for(var d=a._elem.length;0<=--d;)a._elemNo[a._elem[d]]=d;e=e.split("\n");var g=3,h=e[g++];this.nAtoms=parseFloat(h.substring(0,3));this.nBonds=parseFloat(h.substring(3,6));this.atoms=Array(this.nAtoms);this.bonds=Array(this.nBonds);this.elements=Array(this.nAtoms+this.nBonds);for(var j=0,k,l,b,d=0;d<this.nAtoms;d++){h=
e[g++];k=parseFloat(h.substring(0,10));l=parseFloat(h.substring(10,20));b=parseFloat(h.substring(20,30));var h=h.substring(31,34).replace(/\s+/g,""),h=a._elemNo[h]||0,f=1==h?0.23:0.35,c=a._CPK[h]||a._CPK[0];this.elements[j++]=this.atoms[d]={type:0,elemNo:h,xyz:[k,l,b],sxyz:[0,0,0],radius:f,color:c,color50:c}}for(d=0;d<this.nBonds;d++){h=e[g++];k=this.atoms[parseFloat(h.substring(0,3))-1];l=this.atoms[parseFloat(h.substring(3,6))-1];b=Math.abs(parseFloat(h.substring(6,9)));switch(b){case 4:case 5:case 6:case 8:b=
1;break;case 7:b=2}h=a._getPointAlong(k.xyz,l.xyz,0.5);c=a._distance(k.xyz,h);f=k.radius<c?a._getPointAlong(k.xyz,h,k.radius/c):[0,0,99999];c=l.radius<c?a._getPointAlong(l.xyz,h,l.radius/c):[0,0,99999];this.elements[j++]=this.bonds[d]={type:1,atoms:[k,l],xyz:h,pts:[f,c],sxyz:[0,0,0],spts:[[0,0,0],[0,0,0]],order:b,color:0}}};h._getColor=function(a,d){"#FFFFFF"==a&&(a="#D0D0D0");var g=parseInt("0x"+a.substring(1),16),h=g>>16&255,j=g>>8&255,g=g&255;255!=h&&(h+=Math.floor((255-h)*d));255!=j&&(j+=Math.floor((255-
j)*d));255!=g&&(g+=Math.floor((255-g)*d));h="000000"+(h<<16|j<<8|g).toString(16);return"#"+h.substring(h.length-6,h.length)};h._draw=function(){if(this.atoms){this._setParams();this._setScreenCoords();var e=this.elements;e.sort(a._zorder);var d=this._canvas.getContext("2d");d.fillStyle=this._color;d.fillRect(0,0,this._canvas.width,this._canvas.height);for(var g=e.length;0<=--g;){var h=e[g];0==h.type?this._drawAtom(d,h):this._drawBond(d,h)}}};h._drawAtom=function(e,d){e.beginPath();if(this.shadeAtoms){var g=
d.srad/4,g=e.createRadialGradient(d.sxyz[0]-g,d.sxyz[1]-g,g,d.sxyz[0],d.sxyz[1],d.srad);g.addColorStop(0,d.color50);g.addColorStop(1,"#FFFFFF"==d.color?"#D0D0D0":d.color);e.fillStyle=g;e.arc(d.sxyz[0],d.sxyz[1],d.srad,0,a._pi2);e.fill()}else e.fillStyle=d.color,e.arc(d.sxyz[0],d.sxyz[1],d.srad,0,a._pi2),e.fill(),e.strokeStyle="#000000",e.lineWidth=1,e.stroke()};h._drawBond=function(a,d){99999!=d.pts[0][2]&&this._drawBondLines(a,d,d.spts[0],d.atoms[0].color);99999!=d.pts[1][2]&&this._drawBondLines(a,
d,d.spts[1],d.atoms[1].color)};h._drawBondLines=function(e,d,g,h){var j=a._temp;j.width=this.bondWidth;j.color=d.color?d.color:h;if(1==d.order)j.pt1=g,j.pt2=d.sxyz,this._drawLine(e,j);else{j.pt1=a._temp1;j.pt2=a._temp2;j.pta=g;j.ptb=d.sxyz;j.dx=j.ptb[0]-j.pta[0];j.dy=j.ptb[1]-j.pta[1];j.mag2d=Math.round(Math.sqrt(j.dx*j.dx+j.dy*j.dy));j.bondOrder=d.order;for(this._resetAxisCoordinates(j);0<j.bondOrder;)this._drawLine(e,j),j.bondOrder--,this._stepAxisCoordinates(j)}};h._drawLine=function(a,d){a.beginPath();
a.strokeStyle=d.color;a.moveTo(d.pt1[0],d.pt1[1]);a.lineTo(d.pt2[0],d.pt2[1]);a.lineWidth=d.width;a.stroke()};h._resetAxisCoordinates=function(a){var d=a.mag2d>>3;1!=this.multipleBondSpacing&&(d*=this.multipleBondSpacing);d=a.width+d;a.dxStep=Math.round(d*a.dy/a.mag2d);a.dyStep=Math.round(d*-a.dx/a.mag2d);a.pt1[0]=a.pta[0];a.pt1[1]=a.pta[1];a.pt2[0]=a.ptb[0];a.pt2[1]=a.ptb[1];d=a.bondOrder-1;a.pt1[0]-=Math.round(a.dxStep*d/2);a.pt1[1]-=Math.round(a.dyStep*d/2);a.pt2[0]-=Math.round(a.dxStep*d/2);a.pt2[1]-=
Math.round(a.dyStep*d/2)};h._stepAxisCoordinates=function(a){a.pt1[0]+=a.dxStep;a.pt1[1]+=a.dyStep;a.pt2[0]+=a.dxStep;a.pt2[1]+=a.dyStep};a._distance=function(a,d){for(var g=0,h=3;0<=--h;)var j=a[h]-d[h],g=g+j*j;return Math.sqrt(g)};a._dot=function(a,d){for(var g=0,h=3;0<=--h;)g+=a[h]*d[h];return g};a._setPt=function(a,d){for(var g=3;0<=--g;)d[g]=a[g];return d};a._scale=function(a,d){for(var g=3;0<=--g;)a[g]*=d};a._length=function(a){for(var d=0,g=3;0<=--g;)d+=a[g]*a[g];return Math.sqrt(d)};a._getPointAlong=
function(a,d,g){return[(d[0]-a[0])*g+a[0],(d[1]-a[1])*g+a[1],(d[2]-a[2])*g+a[2]]};a._zorder=function(a,d){var g=a.sxyz[2],h=d.sxyz[2];return g<h?-1:g>h?1:0};a.M3=function(){this.m00=1;this.m10=this.m02=this.m01=0;this.m11=1;this.m21=this.m20=this.m12=0;this.m22=1};a.M3.prototype.set=function(a,d,g,h,j,k,l,b,f){this.m00=a;this.m01=d;this.m02=g;this.m10=h;this.m11=j;this.m12=k;this.m20=l;this.m21=b;this.m22=f};a.M3.prototype.transform=function(a,d){d[0]=this.m00*a[0]+this.m01*a[1]+this.m02*a[2];d[1]=
this.m10*a[0]+this.m11*a[1]+this.m12*a[2];d[2]=this.m20*a[0]+this.m21*a[1]+this.m22*a[2]};a.M3.prototype.rotX=function(a){var d=Math.cos(a);a=Math.sin(a);this.m00=1;this.m10=this.m02=this.m01=0;this.m11=d;this.m12=-a;this.m20=0;this.m21=a;this.m22=d};a.M3.prototype.rotY=function(a){var d=Math.cos(a);a=Math.sin(a);this.m00=d;this.m01=0;this.m02=a;this.m10=0;this.m11=1;this.m12=0;this.m20=-a;this.m21=0;this.m22=d};a.M3.prototype.mul=function(a){this.set(a.m00*this.m00+a.m01*this.m10+a.m02*this.m20,
a.m00*this.m01+a.m01*this.m11+a.m02*this.m21,a.m00*this.m02+a.m01*this.m12+a.m02*this.m22,a.m10*this.m00+a.m11*this.m10+a.m12*this.m20,a.m10*this.m01+a.m11*this.m11+a.m12*this.m21,a.m10*this.m02+a.m11*this.m12+a.m12*this.m22,a.m20*this.m00+a.m21*this.m10+a.m22*this.m20,a.m20*this.m01+a.m21*this.m11+a.m22*this.m21,a.m20*this.m02+a.m21*this.m12+a.m22*this.m22)};a._pi2=2*Math.PI;a.deg_per_radian=180/Math.PI;a._z3=[0,0,0];a._temp1=[0,0,0];a._temp2=[0,0,0];a._temp={};a._m3=new a.M3})(Jmol._TMApplet);