Pipeline used to characterize transposable elements in 39 molluscan genomes. For any question feel free to contact me at jacopo.martelossi2@unibo.it
-DDE_D.hmm: HMM profiles databse of DDE/D transposases builded up from sequences from Yuan and Wessler, (2011). Used in script 07.DDE_D_ORFs_Identification.sh.
-RVT_MolluscaPfam.hmm: HMM profiles database describing LINEs and LTRs derived RVTs. Used in script 05.LINEs_Identification.sh.
-NJ-SupFam_costrain.txt: Tree file in newick format rapresenting the superfamilies relanthionships obtained with Neighbor-Joining analyses. Used in script 08.LINEs_Phylogenetic_Analyses.sh