Feature/convert tables

[creisle]

Breaking changes

• re-write of xml content parsing to increase flexibility (now can keep track of xml path and customize/overload tag handlers)
• moved code under src folder

XML Content Changes

• can turn off sentence truncating with new option
• default includes tables (let me know if this would break anything for you)
• default keep local element xrefs (ex. Figure 1, Table 2)
• Do not add extra spaces around deleted XML elements

New Features

• created a tests folder and added some unit tests
• added a markdown/docs file for the bioconverters package

TODO (before merge)

the following require admin and must be done by @jakelever

• The build needs codecov to be set up to pass, otherwise the tests are ok (https://app.codecov.io/gh/+)
• the PYPI credentials need to be set up in secrets so that the package will auto-publish to pypi when a tag is created

[codecov-commenter]

Codecov Report

❗ No coverage uploaded for pull request base (master@cb0e9d9). Click here to learn what that means.
The diff coverage is n/a.

@@            Coverage Diff            @@
##             master       #2   +/-   ##
=========================================
  Coverage          ?   54.74%           
=========================================
  Files             ?        5           
  Lines             ?      559           
  Branches          ?        0           
=========================================
  Hits              ?      306           
  Misses            ?      253           
  Partials          ?        0           

Flag	Coverage Δ
unittests	54.74% <0.00%> (?)

Flags with carried forward coverage won't be shown. Click here to find out more.

---

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update cb0e9d9...f000e6c. Read the comment docs.

[creisle]

Found some ways to improve this. I'm going to close this and make a new one once i have that figured out more