Create v0.0.1 of kenjutsu.

.coveragerc

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+[run]
+branch = True
+erase = True
+package = kenjutsu
+[report]
+exclude_lines =
+    # Ignore coverage of code that requires the module to be executed.
+    if __name__ == .__main__.:
+
+    # Ignore continue statement in code as it can't be detected as covered
+    # due to an optimization by the Python interpreter. See coverage issue
+    # ( https://bitbucket.org/ned/coveragepy/issue/198/continue-marked-as-not-covered )
+    # and Python issue ( http://bugs.python.org/issue2506 ).
+    continue
+omit =
+    */python?.?/*
+    */site-packages/*
+    *tests/*
+    */travis_pypi_setup.py
+    */versioneer.py
+    */_version.py
+    */_vendor/*

.editorconfig

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+# http://editorconfig.org
+
+root = true
+
+[*]
+indent_style = space
+indent_size = 4
+trim_trailing_whitespace = true
+insert_final_newline = true
+charset = utf-8
+end_of_line = lf
+
+[*.bat]
+indent_style = tab
+end_of_line = crlf
+
+[LICENSE]
+insert_final_newline = false
+
+[Makefile]
+indent_style = tab

.gitattributes

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+kenjutsu/_version.py export-subst

.github/ISSUE_TEMPLATE.md

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+* kenjutsu version:
+* Python version:
+* Operating System:
+
+### Description
+
+Describe what you were trying to get done.
+Tell us what happened, what went wrong, and what you expected to happen.
+
+### What I Did
+
+```
+Paste the command(s) you ran and the output.
+If there was a crash, please include the traceback here.
+```

.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*,cover
+.hypothesis/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+
+# Sphinx documentation
+docs/_build/
+docs/kenjutsu*.rst
+
+# PyBuilder
+target/

.travis.yml

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+# Config file for automatic testing at travis-ci.org
+# This file will be regenerated if you run travis_pypi_setup.py
+
+sudo: false
+
+language: generic
+
+env:
+  - PYVER="3.5"
+  - PYVER="3.4"
+  - PYVER="2.7"
+
+install:
+  # Install Miniconda.
+  - curl -L https://repo.continuum.io/miniconda/Miniconda3-4.1.11-Linux-x86_64.sh > miniconda.sh
+  - openssl md5 miniconda.sh | grep 874dbb0d3c7ec665adf7231bbb575ab2
+  - bash miniconda.sh -b -p ~/miniconda
+  - rm miniconda.sh
+  - source ~/miniconda/bin/activate root
+  - conda config --set show_channel_urls true
+  - conda update -y -n root --all
+  - conda install -y -n root conda-build
+  - conda clean -tipsy
+
+  # Create the test environment.
+  - conda create -y -n testenv python="${PYVER}"
+  - conda remove -y --force -n testenv openssl
+  - conda env update -n testenv --file environment_dev.yml
+  - conda list --full-name -n testenv openssl || conda install -y -n testenv openssl
+  - source activate testenv
+
+  # Install the package and dependencies.
+  - pip install -e .
+
+# command to run tests, e.g. python setup.py test
+script:
+  - coverage erase
+  - coverage run --source . setup.py test
+  - coverage report
+
+# Report coverage
+after_success:
+  - coveralls
+
+# Disable email notifications.
+notifications:
+  email: false
+
+# After you create the Github repo and add it to Travis, run the
+# travis_pypi_setup.py script to finish PyPI deployment setup
+deploy:
+  provider: pypi
+  distributions: sdist
+  user: jakirkham
+  password:
+    secure: PLEASE_REPLACE_ME
+  on:
+    tags: true
+    repo: jakirkham/kenjutsu
+    condition: $PYVER == 2.7

AUTHORS.rst

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+=======
+Credits
+=======
+
+Development Lead
+----------------
+
+* John Kirkham <kirkhamj@janelia.hhmi.org>
+
+Contributors
+------------
+
+None yet. Why not be the first?

CONTRIBUTING.rst

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+.. highlight:: shell
+
+============
+Contributing
+============
+
+Contributions are welcome, and they are greatly appreciated! Every
+little bit helps, and credit will always be given.
+
+You can contribute in many ways:
+
+Types of Contributions
+----------------------
+
+Report Bugs
+~~~~~~~~~~~
+
+Report bugs at https://github.com/jakirkham/kenjutsu/issues.
+
+If you are reporting a bug, please include:
+
+* Your operating system name and version.
+* Any details about your local setup that might be helpful in troubleshooting.
+* Detailed steps to reproduce the bug.
+
+Fix Bugs
+~~~~~~~~
+
+Look through the GitHub issues for bugs. Anything tagged with "bug"
+and "help wanted" is open to whoever wants to implement it.
+
+Implement Features
+~~~~~~~~~~~~~~~~~~
+
+Look through the GitHub issues for features. Anything tagged with "enhancement"
+and "help wanted" is open to whoever wants to implement it.
+
+Write Documentation
+~~~~~~~~~~~~~~~~~~~
+
+kenjutsu could always use more documentation, whether as part of the
+official kenjutsu docs, in docstrings, or even on the web in blog posts,
+articles, and such.
+
+Submit Feedback
+~~~~~~~~~~~~~~~
+
+The best way to send feedback is to file an issue at https://github.com/jakirkham/kenjutsu/issues.
+
+If you are proposing a feature:
+
+* Explain in detail how it would work.
+* Keep the scope as narrow as possible, to make it easier to implement.
+* Remember that this is a volunteer-driven project, and that contributions
+  are welcome :)
+
+Get Started!
+------------
+
+Ready to contribute? Here's how to set up `kenjutsu` for local development.
+
+1. Fork the `kenjutsu` repo on GitHub.
+2. Clone your fork locally::
+
+    $ git clone git@github.com:your_name_here/kenjutsu.git
+
+3. Install your local copy into an environment. Assuming you have conda installed, this is how you set up your fork for local development (on Windows drop `source`). Replace `"<some version>"` with the Python version used for testing.::
+
+    $ conda create -n kenjutsuenv python="<some version>"
+    $ source activate kenjutsuenv
+    $ python setup.py develop
+
+4. Create a branch for local development::
+
+    $ git checkout -b name-of-your-bugfix-or-feature
+
+   Now you can make your changes locally.
+
+5. When you're done making changes, check that your changes pass flake8 and the tests, including testing other Python versions::
+
+    $ flake8 kenjutsu tests
+    $ python setup.py test or py.test
+
+   To get flake8, just conda install it into your environment.
+
+6. Commit your changes and push your branch to GitHub::
+
+    $ git add .
+    $ git commit -m "Your detailed description of your changes."
+    $ git push origin name-of-your-bugfix-or-feature
+
+7. Submit a pull request through the GitHub website.
+
+Pull Request Guidelines
+-----------------------
+
+Before you submit a pull request, check that it meets these guidelines:
+
+1. The pull request should include tests.
+2. If the pull request adds functionality, the docs should be updated. Put
+   your new functionality into a function with a docstring, and add the
+   feature to the list in README.rst.
+3. The pull request should work for Python 2.7, 3.4 and 3.5. Check
+   https://travis-ci.org/jakirkham/kenjutsu/pull_requests
+   and make sure that the tests pass for all supported Python versions.
+
+Tips
+----
+
+To run a subset of tests::
+
+
+    $ python -m unittest tests.test_kenjutsu

HISTORY.rst

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+=======
+History
+=======
+
+0.1.0 (2016-09-08)
+------------------
+
+* First release on PyPI.

LICENSE.txt

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+
+BSD License
+
+Copyright (c) 2016, John Kirkham
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without modification,
+are permitted provided that the following conditions are met:
+
+* Redistributions of source code must retain the above copyright notice, this
+  list of conditions and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright notice, this
+  list of conditions and the following disclaimer in the documentation and/or
+  other materials provided with the distribution.
+
+* Neither the name of metawrap nor the names of its
+  contributors may be used to endorse or promote products derived from this
+  software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
+IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
+INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
+BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY
+OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
+OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
+OF THE POSSIBILITY OF SUCH DAMAGE.
+

MANIFEST.in

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+
+include AUTHORS.rst
+
+include CONTRIBUTING.rst
+include HISTORY.rst
+include LICENSE.txt
+include README.rst
+
+recursive-include tests *
+recursive-exclude * __pycache__
+recursive-exclude * *.py[co]
+
+recursive-include docs *.rst conf.py Makefile make.bat *.jpg *.png *.gif
+
+include versioneer.py
+include kenjutsu/_version.py