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add polynomial mutation operator (in C)
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#' @title | ||
#' Generator of the polynomial mutation operator. | ||
#' | ||
#' @description | ||
#' Performs an polynomial mutation as used in the SMS-EMOA algorithm. | ||
#' | ||
#' @param p [\code{numeric(1)}]\cr | ||
#' Probability of mutation of each gene. | ||
#' @param eta [\code{numeric(1)}\cr | ||
#' Distance parameter of the mutation distribution. | ||
#' @return [\code{ecr_mutator}] | ||
#' @family mutators | ||
#' @export | ||
makePolynomialMutation = function(p = 0.2, eta = 10) { | ||
assertNumber(p, lower = 0, upper = 1, na.ok = FALSE) | ||
assertNumber(eta, lower = 1, finite = TRUE, na.ok = FALSE) | ||
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force(p) | ||
force(eta) | ||
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mutator = function(ind, task, control) { | ||
par.set = task$par.set | ||
lower = getLower(par.set) | ||
upper = getUpper(par.set) | ||
child = .Call("polynomialMutationC", ind, lower, upper, p, eta) | ||
return(child) | ||
} | ||
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makeMutator( | ||
mutator = mutator, | ||
name = "Polynomial mutation operator", | ||
description = "Apply polynomial mutation to an individual.", | ||
supported = "float", | ||
params = list(p = p, eta = eta) | ||
) | ||
} |
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#include <R.h> | ||
#include <Rinternals.h> | ||
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#include "macros.h" | ||
#include "helpers.h" | ||
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/* Polynomial mutation operator. | ||
* | ||
* Performs polynomial mutation of an individual with probability p for each gene. | ||
* | ||
* @param x [numeric] | ||
* Individual. | ||
* @param lower [numeric] | ||
* Lower box constraints. | ||
* @param upper [numeric] | ||
* Upper box constraints. | ||
* @param p [numeric(1)] | ||
* Probability for mutation of each gene. | ||
* @param eta [numeric(1)] | ||
* Parameter eta. | ||
* @return [numeric] Mutated individual. | ||
*/ | ||
SEXP polynomialMutationC(SEXP x, SEXP lower, SEXP upper, SEXP p, SEXP eta) { | ||
SEXP res; | ||
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// unpack imcoming R data | ||
EXTRACT_NUMERIC_VECTOR(x, c_x, d); | ||
EXTRACT_NUMERIC_VECTOR(lower, c_lower, c_lower_length); | ||
EXTRACT_NUMERIC_VECTOR(upper, c_upper, c_upper_length); | ||
EXTRACT_REAL(p, c_p); | ||
EXTRACT_REAL(eta, c_eta); | ||
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const double mpow = 1.0 / (c_eta + 1.0); | ||
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PROTECT(res = allocVector(REALSXP, d)); | ||
double *c_res = REAL(res); | ||
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GetRNGstate(); | ||
double rnd, deltaq; | ||
for (int i = 0; i < d; ++i) { | ||
// do all the complicated stuff here | ||
if (unif_rand() < c_p) { | ||
const double delta = c_upper[i] - c_lower[i]; | ||
rnd = unif_rand(); | ||
if (rnd <= 0.5) { | ||
const double xy = 1.0 - (c_x[i] - c_lower[i]) / delta; | ||
deltaq = pow(2.0 * rnd + (1.0 - 2.0 * rnd) * pow(xy, c_eta + 1.0), mpow) - 1.0; | ||
} else { | ||
const double xy = 1.0 - (c_upper[i] - c_x[i]) / delta; | ||
deltaq = 1.0 - pow(2.0 * (1.0 - rnd) + 2.0 * (rnd - 0.5) * pow(xy, c_eta + 1.0), mpow); | ||
} | ||
c_res[i] = forceToBounds(c_x[i] + deltaq * delta, c_lower[i], c_upper[i]); | ||
} else { | ||
c_res[i] = c_x[i]; | ||
} | ||
} | ||
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PutRNGstate(); | ||
UNPROTECT(1); /* res */ | ||
return(res); | ||
} |