adding modifiedJelly tar to source for cmake compatability

configure.sh

@@ -11,12 +11,4 @@ perl -p -i -e "s/RDIR=.*\n/RDIR=$( echo $(pwd)| perl -p -i -e "s/\//\\\\\//g")\n
 perl -p -i -e "s/RDIR=.*\n/RDIR=$( echo $(pwd)| perl -p -i -e "s/\//\\\\\//g")\n/g"  cloud/RunJellyForRUFUS.UGP
 perl -p -i -e "s/RDIR=.*\n/RDIR=$( echo $(pwd)| perl -p -i -e "s/\//\\\\\//g")\n/g"  runRufus.sh
 
-RUFUS_DIR=$(pwd)
-
-if [ ! -d "bin" ]; then
-mkdir bin
-fi
-if [ ! -d "bin/externals" ]; then
-cd bin && mkdir externals && cd externals && mkdir external && cd external && touch CMakeLists.txt
-fi
 

externals/CMakeLists.txt

@@ -19,7 +19,7 @@ LIST(APPEND RUFUS_DEPENDENCIES ${MODIFIED_JELLYFISH_PROJECT})
 
 
 
-SET(RUFUS_SOURCE_DIR ${CMAKE_SOURCE_DIR}/bin/externals/external CACHE INTERNAL "" FORCE)
+SET(RUFUS_SOURCE_DIR ${CMAKE_SOURCE_DIR}/src/externals/external CACHE INTERNAL "" FORCE)
 
 SET(RUFUS_EXTERNAL_PROJECT_DIR ${CMAKE_BINARY_DIR}/externals/rufus_external_project CACHE INTERNAL "external project directory")
 SET(RUFUS_EXTERNAL_PROJECT rufus_external_project CACHE INTERNAL "all rufus external projects")

externals/modifiedJellyfish.cmake

@@ -7,7 +7,7 @@ SET(MODIFIED_JELLYFISH_LIB)
 
 
 ExternalProject_Add(${MODIFIED_JELLYFISH_PROJECT}
-	URL https://github.com/WilliamRichards2017/modifiedJellyfish/blob/master/modifiedJellyfish.tar.gz
+	URL ${PROJECT_SOURCE_DIR}/src/modifiedJellyfish.tar.gz
 
         CONFIGURE_COMMAND ${PROJECT_SOURCE_DIR}/bin/externals/modified_jellyfish/src/modified_jellyfish_project/configure --prefix=${PROJECT_SOURCE_DIR}/bin/externals/modified_jellyfish/src/modified_jellyfish_project/
         BUILD_IN_SOURCE 1