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mutlog.go
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mutlog.go
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/* Handles writing to mutation log for ops on labels. */
package labels
import (
"sync"
"github.com/janelia-flyem/dvid/datastore"
"github.com/janelia-flyem/dvid/datatype/common/proto"
"github.com/janelia-flyem/dvid/dvid"
"github.com/janelia-flyem/dvid/storage"
)
// LogSplit logs the split of a set of voxels from the underlying label.
func LogSplit(d dvid.Data, v dvid.VersionID, op SplitOp) error {
uuid, err := datastore.UUIDFromVersion(v)
if err != nil {
return err
}
logable, ok := d.(storage.LogWritable)
if !ok {
return nil // skip logging
}
log := logable.GetWriteLog()
if log == nil {
return nil
}
data, err := serializeSplit(op)
if err != nil {
return err
}
msg := storage.LogMessage{EntryType: proto.SplitOpType, Data: data}
return log.Append(d.DataUUID(), uuid, msg)
}
// LogSupervoxelSplit logs the split of a supervoxel into two separate supervoxels.
func LogSupervoxelSplit(d dvid.Data, v dvid.VersionID, op SplitSupervoxelOp) error {
uuid, err := datastore.UUIDFromVersion(v)
if err != nil {
return err
}
logable, ok := d.(storage.LogWritable)
if !ok {
return nil // skip logging
}
log := logable.GetWriteLog()
if log == nil {
return nil
}
pop := proto.SupervoxelSplitOp{
Mutid: op.MutID,
Supervoxel: op.Supervoxel,
Splitlabel: op.SplitSupervoxel,
Remainlabel: op.RemainSupervoxel,
}
serialization, err := pop.Marshal()
if err != nil {
return err
}
msg := storage.LogMessage{EntryType: proto.SupervoxelSplitType, Data: serialization}
return log.Append(d.DataUUID(), uuid, msg)
}
// LogMerge logs the merge of supervoxels to a label.
func LogMerge(d dvid.Data, v dvid.VersionID, op MergeOp) error {
uuid, err := datastore.UUIDFromVersion(v)
if err != nil {
return err
}
logable, ok := d.(storage.LogWritable)
if !ok {
return nil // skip logging
}
log := logable.GetWriteLog()
if log == nil {
return nil
}
data, err := serializeMerge(op)
if err != nil {
return err
}
msg := storage.LogMessage{EntryType: proto.MergeOpType, Data: data}
return log.Append(d.DataUUID(), uuid, msg)
}
// LogCleave logs the cleave of supervoxels to a label.
func LogCleave(d dvid.Data, v dvid.VersionID, op CleaveOp) error {
uuid, err := datastore.UUIDFromVersion(v)
if err != nil {
return err
}
logable, ok := d.(storage.LogWritable)
if !ok {
return nil // skip logging
}
log := logable.GetWriteLog()
if log == nil {
return nil
}
data, err := serializeCleave(op)
if err != nil {
return err
}
msg := storage.LogMessage{EntryType: proto.CleaveOpType, Data: data}
return log.Append(d.DataUUID(), uuid, msg)
}
// LogMapping logs the mapping of supervoxels to a label.
func LogMapping(d dvid.Data, v dvid.VersionID, op MappingOp) error {
uuid, err := datastore.UUIDFromVersion(v)
if err != nil {
return err
}
logable, ok := d.(storage.LogWritable)
if !ok {
return nil // skip logging
}
log := logable.GetWriteLog()
if log == nil {
return nil
}
data, err := op.Marshal()
if err != nil {
return err
}
msg := storage.LogMessage{EntryType: proto.MappingOpType, Data: data}
return log.Append(d.DataUUID(), uuid, msg)
}
// LogMappings logs a collection of mapping operations to a UUID.
func LogMappings(d dvid.Data, v dvid.VersionID, ops proto.MappingOps) error {
uuid, err := datastore.UUIDFromVersion(v)
if err != nil {
return err
}
logable, ok := d.(storage.LogWritable)
if !ok {
return nil // skip logging
}
log := logable.GetWriteLog()
if log == nil {
return nil
}
for _, op := range ops.Mappings {
data, err := op.Marshal()
if err != nil {
return err
}
msg := storage.LogMessage{EntryType: proto.MappingOpType, Data: data}
if err := log.Append(d.DataUUID(), uuid, msg); err != nil {
return err
}
}
return nil
}
func ReadMappingLog(d dvid.Data, v dvid.VersionID) ([]MappingOp, error) {
uuid, err := datastore.UUIDFromVersion(v)
if err != nil {
return nil, err
}
logreadable, ok := d.(storage.LogReadable)
if !ok {
return nil, nil
}
rl := logreadable.GetReadLog()
if rl == nil {
return nil, nil
}
msgs, err := rl.ReadAll(d.DataUUID(), uuid)
if err != nil {
return nil, err
}
if len(msgs) == 0 {
return nil, nil
}
mappingOps := make([]MappingOp, len(msgs))
var numMappings int
for i, msg := range msgs {
if msg.EntryType != proto.MappingOpType {
continue
}
var op proto.MappingOp
if err := op.Unmarshal(msg.Data); err != nil {
return nil, err
}
mappingOps[i].Mapped = op.GetMapped()
original := op.GetOriginal()
mappingOps[i].Original = make(Set, len(original))
for _, label := range original {
mappingOps[i].Original[label] = struct{}{}
}
numMappings++
}
mappingOps = mappingOps[:numMappings]
return mappingOps, nil
}
func StreamLog(d dvid.Data, v dvid.VersionID, ch chan storage.LogMessage, wg *sync.WaitGroup) error {
uuid, err := datastore.UUIDFromVersion(v)
if err != nil {
return err
}
logreadable, ok := d.(storage.LogReadable)
if !ok {
close(ch)
return nil
}
rl := logreadable.GetReadLog()
if rl == nil {
close(ch)
return nil
}
return rl.StreamAll(d.DataUUID(), uuid, ch, wg)
}
func LogAffinity(d dvid.Data, v dvid.VersionID, aff Affinity) error {
uuid, err := datastore.UUIDFromVersion(v)
if err != nil {
return err
}
logable, ok := d.(storage.LogWritable)
if !ok {
return nil // skip logging
}
log := logable.GetWriteLog()
if log == nil {
return nil
}
data, err := serializeAffinity(aff)
if err != nil {
return err
}
msg := storage.LogMessage{EntryType: proto.AffinityType, Data: data}
return log.Append(d.DataUUID(), uuid, msg)
}
func serializeSplit(op SplitOp) (serialization []byte, err error) {
rlesBytes, err := op.RLEs.MarshalBinary()
if err != nil {
return nil, err
}
svsplits := make(map[uint64]*proto.SVSplit, len(op.SplitMap))
for supervoxel, split := range op.SplitMap {
svsplit := new(proto.SVSplit)
svsplit.Splitlabel = split.Split
svsplit.Remainlabel = split.Remain
svsplits[supervoxel] = svsplit
}
pop := proto.SplitOp{
Mutid: op.MutID,
Target: op.Target,
Newlabel: op.NewLabel,
Coarse: op.Coarse,
Rles: rlesBytes,
Svsplits: svsplits,
}
return pop.Marshal()
}
func serializeMerge(op MergeOp) (serialization []byte, err error) {
merged := make([]uint64, len(op.Merged))
var i int
for label := range op.Merged {
merged[i] = label
i++
}
pop := &proto.MergeOp{
Mutid: op.MutID,
Target: op.Target,
Merged: merged,
}
return pop.Marshal()
}
func serializeCleave(op CleaveOp) (serialization []byte, err error) {
pop := &proto.CleaveOp{
Mutid: op.MutID,
Target: op.Target,
Cleavedlabel: op.CleavedLabel,
Cleaved: op.CleavedSupervoxels,
}
return pop.Marshal()
}
func serializeAffinity(aff Affinity) (serialization []byte, err error) {
pop := &proto.Affinity{
Label1: aff.Label1,
Label2: aff.Label2,
Value: aff.Value,
}
return pop.Marshal()
}