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wormsbynames r_parsed error is back #4
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Sry to hear this. I am writing you so you know I received your mail. I
might have a look into this. I fear that this problem is recurrent since I
badly designed the kernel of this particular function.
Since I shifted my occupation I do consider abandoning the package sooner
or later, bc it actually needs a major rewrite. I will notify you about my
decision within several days.
My first uninformed guess is that it might have something to do with two
flavors of the same species occurring (pomatoshistus). Have you tried
removing the 2nd occurrence?
Might be unrelated though. WORMS keeps changing their protocols without
notification so its a pain figuring what kind of flexibility the code must
have.
So, long story short. If you know someone who wants to take over the
project pls let me know. I will gladly assist in unraveling the code.
Best,
Jan
Am 22. Februar 2019 um 08:56:41, PierreOcean (notifications@github.com)
schrieb:
Hi @janhoo <https://github.com/janhoo>, the issue reported in April for the
wormsbyname function is back.
I had to switch to a different package. Yesterday, I have been advised to
use "worms" package again and still having this "Error in
r_parsed[[i]][[1]] : subscript out of bounds" issue even with a different
data set.
Could you look into this? Or someone else?
[image: screenshot 2019-02-22 09 56 16]
<https://user-images.githubusercontent.com/10992175/53227845-21adc800-3688-11e9-8e99-a6aad918544a.png>
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Hi @janhoo, I do not think the two "Pomatoschistus" are the problem here. First they were included as P. spp. and P. sp. (combination of two datasets). I still had the same problem. I tried a different package (taxize) which did not recognize the "spp." and "sp." terms, if I am recalling it right. I just tried again... and the function works today! With and without the duplicates Pomatoschistus. Anyway, I do not know who could replace you but maybe Scott Chamberlain from the 'taxize' package? Or he might know who could take over the worms package. |
@janhoo @PierreOcean There is a WoRMS package by @sckott already, see https://github.com/ropensci/worrms |
@pieterprovoost Aware of this package. I have been in touch with @sckott and his woRRms package is at the core of taxize. Not sure it is implied to work as a standalone. |
Hi @janhoo, the issue reported in April for the wormsbyname function is back.
I had to switch to a different package. Yesterday, I have been advised to use "worms" package again and still having this "Error in r_parsed[[i]][[1]] : subscript out of bounds" issue even with a different data set.
Could you look into this? Or someone else?
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