added flag and test for reference misalignment

jaredgk · Jun 20, 2017 · 1484802 · 1484802
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commit 1484802
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Showing 4 changed files with 50,025 additions and 1,200,014 deletions.
diff --git a/jared/example/human_g1k_chr11.fasta b/jared/example/human_g1k_chr11.fasta
diff --git a/jared/example/human_g1k_messy.fasta b/jared/example/human_g1k_messy.fasta
diff --git a/jared/tests.py b/jared/tests.py
diff --git a/jared/vcf_ref_to_seq.py b/jared/vcf_ref_to_seq.py