Scheduled monthly dependency update for October #149

pyup-bot · 2019-10-01T16:33:16Z

Update hypothesis from 4.32.2 to 4.37.0.

The bot wasn't able to find a changelog for this release. Got an idea?

Links

PyPI: https://pypi.org/project/hypothesis
Changelog: https://pyup.io/changelogs/hypothesis/
Repo: https://github.com/HypothesisWorks/hypothesis/tree/master/hypothesis-python

Update joblib from 0.13.2 to 0.14.0.

Changelog

0.14.0

--------------

- Improved the load balancing between workers to avoid stranglers caused by an
excessively large batch size when the task duration is varying significantly
(because of the combined use of ``joblib.Parallel`` and ``joblib.Memory``
with a partially warmed cache for instance).
https://github.com/joblib/joblib/pull/899

- Add official support for Python 3.8: fixed protocol number in `Hasher`
and updated tests.

- Fix a deadlock when using the dask backend (when scattering large numpy
arrays).
https://github.com/joblib/joblib/pull/914

- Warn users that they should never use `joblib.load` with files from
untrusted sources. Fix security related API change introduced in numpy
1.6.3 that would prevent using joblib with recent numpy versions.
https://github.com/joblib/joblib/pull/879

- Upgrade to cloudpickle 1.1.1 that add supports for the upcoming
Python 3.8 release among other things.
https://github.com/joblib/joblib/pull/878

- Fix semaphore availability checker to avoid spawning resource trackers
on module import.
https://github.com/joblib/joblib/pull/893

- Fix the oversubscription protection to only protect against nested
`Parallel` calls. This allows `joblib` to be run in background threads.
https://github.com/joblib/joblib/pull/934

- Fix `ValueError` (negative dimensions) when pickling large numpy arrays on
Windows.
https://github.com/joblib/joblib/pull/920

- Upgrade to loky 2.6.0 that add supports for the setting environment variables
in child before loading any module.
https://github.com/joblib/joblib/pull/940

- Fix the oversubscription protection for native libraries using threadpools
(OpenBLAS, MKL, Blis and OpenMP runtimes).
The maximal number of threads is can now be set in children using the
``inner_max_num_threads`` in ``parallel_backend``. It defaults to
``cpu_count() // n_jobs``.
https://github.com/joblib/joblib/pull/940

Links

PyPI: https://pypi.org/project/joblib
Changelog: https://pyup.io/changelogs/joblib/
Docs: https://joblib.readthedocs.io

Update multiprocess from 0.70.8 to 0.70.9.

The bot wasn't able to find a changelog for this release. Got an idea?

Links

Update mypy from 0.720 to 0.730.

The bot wasn't able to find a changelog for this release. Got an idea?

Links

PyPI: https://pypi.org/project/mypy
Homepage: http://www.mypy-lang.org/

Update numpy from 1.17.0 to 1.17.2.

The bot wasn't able to find a changelog for this release. Got an idea?

Links

PyPI: https://pypi.org/project/numpy
Homepage: https://www.numpy.org

Update pandas from 0.25.0 to 0.25.1.

The bot wasn't able to find a changelog for this release. Got an idea?

Links

PyPI: https://pypi.org/project/pandas
Homepage: http://pandas.pydata.org

Update pre-commit from 1.17.0 to 1.18.3.

Changelog

1.18.3

===================

Fixes
- Fix `node_modules` plugin installation on windows
 - 1123 issue by henryykt.
 - 1122 PR by henryykt.

1.18.2

===================

Fixes
- Make default python lookup more deterministic to avoid redundant installs
 - 1117 PR by scop.

1.18.1

===================

Fixes
- Fix installation of `rust` hooks with new `cargo`
 - 1112 issue by zimbatm.
 - 1113 PR by zimbatm.

1.18.0

===================

Features
- Use the current running executable if it matches the requested
`language_version`
 - 1062 PR by asottile.
- Print the stage when a hook is not found
 - 1078 issue by madkinsz.
 - 1079 PR by madkinsz.
- `pre-commit autoupdate` now supports non-`master` default branches
 - 1089 PR by asottile.
- Add `pre-commit init-templatedir` which makes it easier to automatically
enable `pre-commit` in cloned repositories.
 - 1084 issue by ssbarnea.
 - 1090 PR by asottile.
 - 1107 PR by asottile.
- pre-commit&#39;s color can be controlled using
`PRE_COMMIT_COLOR={auto,always,never}`
 - 1073 issue by saper.
 - 1092 PR by geieredgar.
 - 1098 PR by geieredgar.
- pre-commit&#39;s color can now be disabled using `TERM=dumb`
 - 1073 issue by saper.
 - 1103 PR by asottile.
- pre-commit now supports `docker` based hooks on windows
 - 1072 by cz-fish.
 - 1093 PR by geieredgar.

Fixes
- Fix shallow clone
 - 1077 PR by asottile.
- Fix autoupdate version flip flop when using shallow cloning
 - 1076 issue by mxr.
 - 1088 PR by asottile.
- Fix autoupdate when the current revision is invalid
 - 1088 PR by asottile.

Misc.
- Replace development instructions with `tox --devenv ...`
 - 1032 issue by yoavcaspi.
 - 1067 PR by asottile.

Links

PyPI: https://pypi.org/project/pre-commit
Changelog: https://pyup.io/changelogs/pre-commit/
Repo: https://github.com/pre-commit/pre-commit

Update pytest from 5.0.1 to 5.2.0.

Changelog

5.1.3

=========================

Bug Fixes
---------

- `5807 &lt;https://github.com/pytest-dev/pytest/issues/5807&gt;`_: Fix pypy3.6 (nightly) on windows.


- `5811 &lt;https://github.com/pytest-dev/pytest/issues/5811&gt;`_: Handle ``--fulltrace`` correctly with ``pytest.raises``.


- `5819 &lt;https://github.com/pytest-dev/pytest/issues/5819&gt;`_: Windows: Fix regression with conftest whose qualified name contains uppercase
characters (introduced by 5792).

5.1.2

=========================

Bug Fixes
---------

- `2270 &lt;https://github.com/pytest-dev/pytest/issues/2270&gt;`_: Fixed ``self`` reference in function-scoped fixtures defined plugin classes: previously ``self``
would be a reference to a *test* class, not the *plugin* class.


- `570 &lt;https://github.com/pytest-dev/pytest/issues/570&gt;`_: Fixed long standing issue where fixture scope was not respected when indirect fixtures were used during
parametrization.


- `5782 &lt;https://github.com/pytest-dev/pytest/issues/5782&gt;`_: Fix decoding error when printing an error response from ``--pastebin``.


- `5786 &lt;https://github.com/pytest-dev/pytest/issues/5786&gt;`_: Chained exceptions in test and collection reports are now correctly serialized, allowing plugins like
``pytest-xdist`` to display them properly.


- `5792 &lt;https://github.com/pytest-dev/pytest/issues/5792&gt;`_: Windows: Fix error that occurs in certain circumstances when loading
``conftest.py`` from a working directory that has casing other than the one stored
in the filesystem (e.g., ``c:\test`` instead of ``C:\test``).

5.1.1

=========================

Bug Fixes
---------

- `5751 &lt;https://github.com/pytest-dev/pytest/issues/5751&gt;`_: Fixed ``TypeError`` when importing pytest on Python 3.5.0 and 3.5.1.

5.1.0

=========================

Removals
--------

- `5180 &lt;https://github.com/pytest-dev/pytest/issues/5180&gt;`_: As per our policy, the following features have been deprecated in the 4.X series and are now
removed:

* ``Request.getfuncargvalue``: use ``Request.getfixturevalue`` instead.

* ``pytest.raises`` and ``pytest.warns`` no longer support strings as the second argument.

* ``message`` parameter of ``pytest.raises``.

* ``pytest.raises``, ``pytest.warns`` and ``ParameterSet.param`` now use native keyword-only
 syntax. This might change the exception message from previous versions, but they still raise
 ``TypeError`` on unknown keyword arguments as before.

* ``pytest.config`` global variable.

* ``tmpdir_factory.ensuretemp`` method.

* ``pytest_logwarning`` hook.

* ``RemovedInPytest4Warning`` warning type.

* ``request`` is now a reserved name for fixtures.


For more information consult
`Deprecations and Removals &lt;https://docs.pytest.org/en/latest/deprecations.html&gt;`__ in the docs.


- `5565 &lt;https://github.com/pytest-dev/pytest/issues/5565&gt;`_: Removed unused support code for `unittest2 &lt;https://pypi.org/project/unittest2/&gt;`__.

The ``unittest2`` backport module is no longer
necessary since Python 3.3+, and the small amount of code in pytest to support it also doesn&#39;t seem
to be used: after removed, all tests still pass unchanged.

Although our policy is to introduce a deprecation period before removing any features or support
for third party libraries, because this code is apparently not used
at all (even if ``unittest2`` is used by a test suite executed by pytest), it was decided to
remove it in this release.

If you experience a regression because of this, please
`file an issue &lt;https://github.com/pytest-dev/pytest/issues/new&gt;`__.


- `5615 &lt;https://github.com/pytest-dev/pytest/issues/5615&gt;`_: ``pytest.fail``, ``pytest.xfail`` and ``pytest.skip`` no longer support bytes for the message argument.

This was supported for Python 2 where it was tempting to use ``&quot;message&quot;``
instead of ``u&quot;message&quot;``.

Python 3 code is unlikely to pass ``bytes`` to these functions. If you do,
please decode it to an ``str`` beforehand.



Features
--------

- `5564 &lt;https://github.com/pytest-dev/pytest/issues/5564&gt;`_: New ``Config.invocation_args`` attribute containing the unchanged arguments passed to ``pytest.main()``.


- `5576 &lt;https://github.com/pytest-dev/pytest/issues/5576&gt;`_: New `NUMBER &lt;https://docs.pytest.org/en/latest/doctest.htmlusing-doctest-options&gt;`__
option for doctests to ignore irrelevant differences in floating-point numbers.
Inspired by Sébastien Boisgérault&#39;s `numtest &lt;https://github.com/boisgera/numtest&gt;`__
extension for doctest.



Improvements
------------

- `5471 &lt;https://github.com/pytest-dev/pytest/issues/5471&gt;`_: JUnit XML now includes a timestamp and hostname in the testsuite tag.


- `5707 &lt;https://github.com/pytest-dev/pytest/issues/5707&gt;`_: Time taken to run the test suite now includes a human-readable representation when it takes over
60 seconds, for example::

   ===== 2 failed in 102.70s (0:01:42) =====



Bug Fixes
---------

- `4344 &lt;https://github.com/pytest-dev/pytest/issues/4344&gt;`_: Fix RuntimeError/StopIteration when trying to collect package with &quot;__init__.py&quot; only.


- `5115 &lt;https://github.com/pytest-dev/pytest/issues/5115&gt;`_: Warnings issued during ``pytest_configure`` are explicitly not treated as errors, even if configured as such, because it otherwise completely breaks pytest.


- `5477 &lt;https://github.com/pytest-dev/pytest/issues/5477&gt;`_: The XML file produced by ``--junitxml`` now correctly contain a ``&lt;testsuites&gt;`` root element.


- `5523 &lt;https://github.com/pytest-dev/pytest/issues/5523&gt;`_: Fixed using multiple short options together in the command-line (for example ``-vs``) in Python 3.8+.


- `5524 &lt;https://github.com/pytest-dev/pytest/issues/5524&gt;`_: Fix issue where ``tmp_path`` and ``tmpdir`` would not remove directories containing files marked as read-only,
which could lead to pytest crashing when executed a second time with the ``--basetemp`` option.


- `5537 &lt;https://github.com/pytest-dev/pytest/issues/5537&gt;`_: Replace ``importlib_metadata`` backport with ``importlib.metadata`` from the
standard library on Python 3.8+.


- `5578 &lt;https://github.com/pytest-dev/pytest/issues/5578&gt;`_: Improve type checking for some exception-raising functions (``pytest.xfail``, ``pytest.skip``, etc)
so they provide better error messages when users meant to use marks (for example ``pytest.xfail``
instead of ``pytest.mark.xfail``).


- `5606 &lt;https://github.com/pytest-dev/pytest/issues/5606&gt;`_: Fixed internal error when test functions were patched with objects that cannot be compared
for truth values against others, like ``numpy`` arrays.


- `5634 &lt;https://github.com/pytest-dev/pytest/issues/5634&gt;`_: ``pytest.exit`` is now correctly handled in ``unittest`` cases.
This makes ``unittest`` cases handle ``quit`` from pytest&#39;s pdb correctly.


- `5650 &lt;https://github.com/pytest-dev/pytest/issues/5650&gt;`_: Improved output when parsing an ini configuration file fails.


- `5701 &lt;https://github.com/pytest-dev/pytest/issues/5701&gt;`_: Fix collection of ``staticmethod`` objects defined with ``functools.partial``.


- `5734 &lt;https://github.com/pytest-dev/pytest/issues/5734&gt;`_: Skip async generator test functions, and update the warning message to refer to ``async def`` functions.



Improved Documentation
----------------------

- `5669 &lt;https://github.com/pytest-dev/pytest/issues/5669&gt;`_: Add docstring for ``Testdir.copy_example``.



Trivial/Internal Changes
------------------------

- `5095 &lt;https://github.com/pytest-dev/pytest/issues/5095&gt;`_: XML files of the ``xunit2`` family are now validated against the schema by pytest&#39;s own test suite
to avoid future regressions.


- `5516 &lt;https://github.com/pytest-dev/pytest/issues/5516&gt;`_: Cache node splitting function which can improve collection performance in very large test suites.


- `5603 &lt;https://github.com/pytest-dev/pytest/issues/5603&gt;`_: Simplified internal ``SafeRepr`` class and removed some dead code.


- `5664 &lt;https://github.com/pytest-dev/pytest/issues/5664&gt;`_: When invoking pytest&#39;s own testsuite with ``PYTHONDONTWRITEBYTECODE=1``,
the ``test_xfail_handling`` test no longer fails.


- `5684 &lt;https://github.com/pytest-dev/pytest/issues/5684&gt;`_: Replace manual handling of ``OSError.errno`` in the codebase by new ``OSError`` subclasses (``PermissionError``, ``FileNotFoundError``, etc.).

Links

PyPI: https://pypi.org/project/pytest
Changelog: https://pyup.io/changelogs/pytest/
Homepage: https://docs.pytest.org/en/latest/

Update scipy from 1.3.0 to 1.3.1.

The bot wasn't able to find a changelog for this release. Got an idea?

Links

PyPI: https://pypi.org/project/scipy
Changelog: https://pyup.io/changelogs/scipy/
Repo: https://github.com/scipy/scipy/releases
Homepage: https://www.scipy.org

Update tqdm from 4.32.2 to 4.36.1.

Changelog

4.36.0

- expose more custom format params
- potential thread safety fix (548)
- update submodule architecture (198 -&gt; 800)
+ backward-compatibility
+ expose `utils`
+ rename `main` -&gt; `cli`
+ add/fix tests
+ fix minor cached var optimisation
+ `gui` partial upgrade (790)
+ `notebook` upgrade (790)
 * support `{bar}` in `bar_format` (594)
 * inherit methods including `set_*(refresh)` (740 -&gt; 741)
+ ready for `contrib` releases (252)
- support custom `bar_format` with unknown `total`
- fix `tqdm_notebook` red block on explicit `file=None` (791)
- update notebook to fully support custom `bar_format` (594, 649)
- misc tidy
+ warnings
+ linting
+ update submodule contribution guide (252)
+ parallel `(py)make test`
+ fix Zenodo metadata
- update documentation
+ `pandas`, `notebook`, `gui` (245)
+ indentation
+ update multiprocessing and multithreading examples (796)

4.35.0

- add `{bar}` format specifier (623 -&gt; 799)
+ `[width][type]`
- add tests and documentation
- update performance tests

4.34.0

- add `leave=None` convenience option for `leave = position == 0`
- ensure nested completed bars respect `leave=True` (230)
- ensure nested bars are cleared before being moved up (795)
- support both ` ` and `=` syntax for CLI options (761 -&gt; 774)
- misc documentation updates (778, 782)
- fix/update tests
- update GitHub docker package deployment

4.33.0

- fix `pandas==0.25` API change (780)
- add contributor badges (`sourcerer`)
- fix py26 travis CI
- metadata fixes
+ `.zenodo.json`
+ `CODEOWNERS`
- GitHub package registry docker deployment
- minor linting
- documentation updates (773)

Links

PyPI: https://pypi.org/project/tqdm
Changelog: https://pyup.io/changelogs/tqdm/
Repo: https://github.com/tqdm/tqdm

pyup-bot · 2019-11-01T16:38:20Z

Closing this in favor of #150

pyup-bot added 10 commits October 1, 2019 17:33

Update hypothesis from 4.32.2 to 4.37.0

77e39cd

Update joblib from 0.13.2 to 0.14.0

d8a473e

Update multiprocess from 0.70.8 to 0.70.9

96f8ba3

Update mypy from 0.720 to 0.730

29d4aa1

Update numpy from 1.17.0 to 1.17.2

e8f6509

Update pandas from 0.25.0 to 0.25.1

f48255e

Update pre-commit from 1.17.0 to 1.18.3

a0d88d1

Update pytest from 5.0.1 to 5.2.0

0b40a3b

Update scipy from 1.3.0 to 1.3.1

678200c

Update tqdm from 4.32.2 to 4.36.1

c778d4f

pyup-bot mentioned this pull request Oct 1, 2019

Scheduled monthly dependency update for September #148

Closed

pyup-bot closed this Nov 1, 2019

jason-neal deleted the pyup/scheduled-update-2019-10-01 branch November 1, 2019 16:38

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Scheduled monthly dependency update for October #149

Scheduled monthly dependency update for October #149

pyup-bot commented Oct 1, 2019

pyup-bot commented Nov 1, 2019

Scheduled monthly dependency update for October #149

Scheduled monthly dependency update for October #149

Conversation

pyup-bot commented Oct 1, 2019

Update hypothesis from 4.32.2 to 4.37.0.

Update joblib from 0.13.2 to 0.14.0.

0.14.0

Update multiprocess from 0.70.8 to 0.70.9.

Update mypy from 0.720 to 0.730.

Update numpy from 1.17.0 to 1.17.2.

Update pandas from 0.25.0 to 0.25.1.

Update pre-commit from 1.17.0 to 1.18.3.

1.18.3

1.18.2

1.18.1

1.18.0

Update pytest from 5.0.1 to 5.2.0.

5.1.3

5.1.2

5.1.1

5.1.0

Update scipy from 1.3.0 to 1.3.1.

Update tqdm from 4.32.2 to 4.36.1.

4.36.0

4.35.0

4.34.0

4.33.0

pyup-bot commented Nov 1, 2019