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| .mypy_cache/ | ||
| .pytest_cache/ | ||
| monkeytype.sqlite3 | ||
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| # pycharm | ||
| .idea/ | ||
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| [settings] | ||
| known_third_party = PyAstronomy,astropy,hypothesis,matplotlib,numpy,pkg_resources,pytest,scipy,setuptools,sphinx_rtd_theme | ||
| multi_line_output=3 | ||
| include_trailing_comma=True | ||
| force_grid_wrap=0 | ||
| combine_as_imports=True | ||
| line_length=88 |
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| exclude: '^$' | ||
| fail_fast: false | ||
| repos: | ||
| - repo: https://github.com/asottile/seed-isort-config | ||
| rev: v1.2.0 | ||
| hooks: | ||
| - id: seed-isort-config | ||
| - repo: https://github.com/pre-commit/mirrors-isort | ||
| rev: v4.3.4 | ||
| hooks: | ||
| - id: isort | ||
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| - repo: https://github.com/ambv/black | ||
| rev: 18.6b4 | ||
| hooks: | ||
| - id: black | ||
| language_version: python3.6 | ||
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| - repo: https://github.com/pre-commit/pre-commit-hooks | ||
| rev: v1.4.0 # Use the ref you want to point at | ||
| hooks: | ||
| - id: trailing-whitespace | ||
| - id: end-of-file-fixer | ||
| - id: check-ast | ||
| - id: check-builtin-literals | ||
| - id: check-docstring-first | ||
| # - id: check-executables-have-shebangs # Doesn't work on windows | ||
| - id: check-merge-conflict | ||
| - id: check-json | ||
| - id: check-added-large-files | ||
| - id: check-yaml | ||
| # - id: double-quote-string-fixer | ||
| - id: debug-statements | ||
| - id: name-tests-test | ||
| args: ['--django'] | ||
| - id: requirements-txt-fixer | ||
| # - id: flake8 | ||
| - id: pretty-format-json | ||
| - id: sort-simple-yaml |
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| # Spectrum Overload | ||
| # Spectrum Overload | ||
| ## Changelog | ||
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| Upcoming release: | ||
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| ### 0.3.0 | ||
| - Simplified overload operator function. | ||
| - Add instrument broadening | ||
| - Add indexing/slicing spectrum with [], (Returns new spectrum) | ||
| - Add more Type hints | ||
| - Handle all warnings as errors in testing. | ||
| - Fix test parameters to avoid invalid values. | ||
| - Move test fixtures | ||
| - Test on python 3.7. | ||
| - Add makefile | ||
| - Add Appveyor and shippable configuration. | ||
| - Some general cleanup | ||
| - Update requirements to latest versions. | ||
| - Add pre-commits | ||
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| ##### Depreciations: | ||
| - Drop support for python 2.7 | ||
| - Due xaxis and flux keywords required with "*,". | ||
| - Drop testing of python 3.4. | ||
| - Remove tox.ini | ||
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| ### 0.2.2 28/8/2018 | ||
| - Add styling for markdown in long description. | ||
| - Testing on python 3.7 | ||
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| ## 0.2.1 14/01/2018 | ||
| - Patch try resolve pypi styling | ||
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| ### October 2017 | ||
| For next version | ||
| ## 0.2.0 14/01/2018 | ||
| - Add hypothesis profiles for different test environments. | ||
| - Change header initialization from None to and empty dict | ||
| - Add normalization e.g. | ||
| - Spectrum.normalize("poly", degree=3) | ||
| - Add spectrum plot method. | ||
| - Standardize operations using a operator wrapper. | ||
| - Update documetation. | ||
| - Updated documetation. | ||
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| Version 0.. | ||
| ## Version <0.2.0 | ||
| Before october 2017 | ||
| Many changes that were unrecorded in this change log... | ||
| Spectrum object with interpolation and overloaded operators. | ||
| - Many changes that were unrecorded in this change log... | ||
| - Spectrum object with interpolation and overloaded operators. | ||
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| Started September 2016 | ||
| Project started: September 2016 |
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| include README.md | ||
| recursive-include spectrum_overload/data * | ||
| recursive-include Notebooks * | ||
| recursive-include docs * | ||
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| recursive-include Notebooks * | ||
| recursive-include docs * |
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| # Python makefile https://krzysztofzuraw.com/blog/2016/makefiles-in-python-projects.html | ||
| # Delcare all non-file targets as phony | ||
| .PHONY: clean clean-build clean-data data isort lint test | ||
| TEST_PATH=./ | ||
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| help: | ||
| @echo " clean-pyc" | ||
| @echo " Remove python artifacts." | ||
| @echo " clean-build" | ||
| @echo " Remove build artifacts." | ||
| @echo " isort" | ||
| @echo " Sort import statements." | ||
| @echo " lint" | ||
| @echo " Check style with flake8." | ||
| @echo " test" | ||
| @echo " Run py.test" | ||
| @echo " test-warn" | ||
| @echo " Run py.test with warnings errored" | ||
| @echo " init" | ||
| @echo " Initalize by installing requirements" | ||
| @echo " init-dev" | ||
| @echo " Initalize by installing normal and dev requirements" | ||
| @echo " cov" | ||
| @echo " Produce coverage report" | ||
| @echo " mypy" | ||
| @echo " Run type checking with mypy" | ||
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| clean-pyc: | ||
| find . -name '*.pyc' -exec rm --force {} + | ||
| find . -name '*.pyo' -exec rm --force {} + | ||
| find . -name '*~' -exec rm --force {} + | ||
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| clean-build: | ||
| rm --force --recursive build/ | ||
| rm --force --recursive dist/ | ||
| rm --force --recursive *.egg-info | ||
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| isort: | ||
| sh -c "isort --recursive . " | ||
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| lint: | ||
| flake8 --exclude=.tox | ||
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| test: clean-pyc | ||
| pytest --verbose --color=yes $(TEST_PATH) | ||
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| test-warn: clean-pyc | ||
| pytest --verbose --color=yes $(TEST_PATH) -o "filterwarnings=error" | ||
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| init: | ||
| pip install -r requirements.txt | ||
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| init-dev: | ||
| pip install -r requirements.txt | ||
| pip install -r requirements_dev.txt | ||
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| cov: $(module)/* | ||
| py.test --cov=$(module) | ||
| coverage html | ||
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| mypy: | ||
| # py.test --mypy | ||
| mypy --ignore-missing-imports . |
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| import os | ||
| from hypothesis import settings, Verbosity | ||
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| import numpy as np | ||
| import pytest | ||
| from astropy.io import fits | ||
| from hypothesis import Verbosity, settings | ||
| from pkg_resources import resource_filename | ||
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| from spectrum_overload import Spectrum | ||
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| settings.register_profile("ci", settings(max_examples=1000)) | ||
| settings.register_profile("rpi", settings(max_examples=2)) | ||
| settings.register_profile("dev", settings(max_examples=10)) | ||
| settings.register_profile("debug", settings(max_examples=10, verbosity=Verbosity.verbose)) | ||
| settings.load_profile(os.getenv(u'HYPOTHESIS_PROFILE', 'default')) | ||
| settings.register_profile( | ||
| "debug", settings(max_examples=10, verbosity=Verbosity.verbose) | ||
| ) | ||
| settings.load_profile(os.getenv(u"HYPOTHESIS_PROFILE", "default")) | ||
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| @pytest.fixture | ||
| def phoenix_spectrum(): | ||
| # Get a phoenix spectrum in test | ||
| spec_1 = resource_filename("spectrum_overload", "data/spec_1.fits") | ||
| flux = fits.getdata(spec_1) | ||
| wave = np.arange(len(flux)) | ||
| header = fits.getheader(spec_1) | ||
| return Spectrum(xaxis=wave, flux=flux, header=header) | ||
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| @pytest.fixture | ||
| def ones_spectrum(): | ||
| x = np.linspace(2000, 2200, 1000) | ||
| y = np.ones_like(x) | ||
| spec = Spectrum(xaxis=x, flux=y) | ||
| return spec |
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