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Scheduled monthly dependency update for December #87

Merged
merged 7 commits into from Dec 10, 2018
Merged

Scheduled monthly dependency update for December #87

merged 7 commits into from Dec 10, 2018

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@pyup-bot pyup-bot commented Dec 1, 2018 •
edited by jason-neal

Disables error on warnings in Travis ci

Update astropy from 3.0.4 to 3.0.5.

Changelog

3.0.5

==================

Bug Fixes
---------

astropy.coordinates
^^^^^^^^^^^^^^^^^^^

- Fixed bug in which consecutive ``StaticMatrixTransform``'s in a frame
transform path would be combined in the incorrect order. [7707]

astropy.tests
^^^^^^^^^^^^^

- Fixing bug that doctests were not picked up from the narrative
documentation when tests were run for all modules. [7767]
Links

Update matplotlib from 3.0.0 to 3.0.2.

Changelog
Links

Update numpy from 1.15.2 to 1.15.4.

Changelog

1.15.3

==========================

This is a bugfix release for bugs and regressions reported following the 1.15.2
release.  The Python versions supported by this release are 2.7, 3.4-3.7. The
wheels are linked with OpenBLAS v0.3.0, which should fix some of the linalg
problems reported for NumPy 1.14.

Compatibility Note
==================

The NumPy 1.15.x OS X wheels released on PyPI no longer contain 32-bit
binaries.  That will also be the case in future releases. See
`11625 <https://github.com/numpy/numpy/issues/11625>`__ for the related
discussion.  Those needing 32-bit support should look elsewhere or build
from source.

Contributors
============

A total of 7 people contributed to this release.  People with a "+" by their
names contributed a patch for the first time.

* Allan Haldane
* Charles Harris
* Jeroen Demeyer
* Kevin Sheppard
* Matthew Bowden +
* Matti Picus
* Tyler Reddy

Pull requests merged
====================

A total of 12 pull requests were merged for this release.

* `12080 <https://github.com/numpy/numpy/pull/12080>`__: MAINT: Blacklist some MSVC complex functions.
* `12083 <https://github.com/numpy/numpy/pull/12083>`__: TST: Add azure CI testing to 1.15.x branch.
* `12084 <https://github.com/numpy/numpy/pull/12084>`__: BUG: test_path() now uses Path.resolve()
* `12085 <https://github.com/numpy/numpy/pull/12085>`__: TST, MAINT: Fix some failing tests on azure-pipelines mac and...
* `12187 <https://github.com/numpy/numpy/pull/12187>`__: BUG: Fix memory leak in mapping.c
* `12188 <https://github.com/numpy/numpy/pull/12188>`__: BUG: Allow boolean subtract in histogram
* `12189 <https://github.com/numpy/numpy/pull/12189>`__: BUG: Fix in-place permutation
* `12190 <https://github.com/numpy/numpy/pull/12190>`__: BUG: limit default for get_num_build_jobs() to 8
* `12191 <https://github.com/numpy/numpy/pull/12191>`__: BUG: OBJECT_to_* should check for errors
* `12192 <https://github.com/numpy/numpy/pull/12192>`__: DOC: Prepare for NumPy 1.15.3 release.
* `12237 <https://github.com/numpy/numpy/pull/12237>`__: BUG: Fix MaskedArray fill_value type conversion.
* `12238 <https://github.com/numpy/numpy/pull/12238>`__: TST: Backport azure-pipeline testing fixes for Mac


==========================
Links

Update hypothesis from 3.74.0 to 3.82.1.

The bot wasn't able to find a changelog for this release. Got an idea?

Links

Update pre-commit from 1.11.1 to 1.12.0.

Changelog

1.12.0

======

Fixes
- Install multi-hook repositories only once (performance)
 - issue by chriskuehl.
 - 852 PR by asottile.
- Improve performance by factoring out pkg_resources (performance)
 - 840 issue by RonnyPfannschmidt.
 - 846 PR by asottile.

1.11.2

======

Fixes
- `check-useless-exclude` now considers `types`
 - 704 issue by asottile.
 - 837 PR by georgeyk.
- `pre-push` hook was not identifying all commits on push to new branch
 - 843 issue by prem-nuro.
 - 844 PR by asottile.
Links

Update pytest from 3.8.1 to 4.0.1.

Changelog

4.0.1

=========================

Bug Fixes
---------

- `3952 <https://github.com/pytest-dev/pytest/issues/3952>`_: Display warnings before "short test summary info" again, but still later warnings in the end.


- `4386 <https://github.com/pytest-dev/pytest/issues/4386>`_: Handle uninitialized exceptioninfo in repr/str.


- `4393 <https://github.com/pytest-dev/pytest/issues/4393>`_: Do not create ``.gitignore``/``README.md`` files in existing cache directories.


- `4400 <https://github.com/pytest-dev/pytest/issues/4400>`_: Rearrange warning handling for the yield test errors so the opt-out in 4.0.x correctly works.


- `4405 <https://github.com/pytest-dev/pytest/issues/4405>`_: Fix collection of testpaths with ``--pyargs``.


- `4412 <https://github.com/pytest-dev/pytest/issues/4412>`_: Fix assertion rewriting involving ``Starred`` + side-effects.


- `4425 <https://github.com/pytest-dev/pytest/issues/4425>`_: Ensure we resolve the absolute path when the given ``--basetemp`` is a relative path.



Trivial/Internal Changes
------------------------

- `4315 <https://github.com/pytest-dev/pytest/issues/4315>`_: Use ``pkg_resources.parse_version`` instead of ``LooseVersion`` in minversion check.


- `4440 <https://github.com/pytest-dev/pytest/issues/4440>`_: Adjust the stack level of some internal pytest warnings.

4.0.0

=========================

Removals
--------

- `3737 <https://github.com/pytest-dev/pytest/issues/3737>`_: **RemovedInPytest4Warnings are now errors by default.**

Following our plan to remove deprecated features with as little disruption as
possible, all warnings of type ``RemovedInPytest4Warnings`` now generate errors
instead of warning messages.

**The affected features will be effectively removed in pytest 4.1**, so please consult the
`Deprecations and Removals <https://docs.pytest.org/en/latest/deprecations.html>`__
section in the docs for directions on how to update existing code.

In the pytest ``4.0.X`` series, it is possible to change the errors back into warnings as a stop
gap measure by adding this to your ``pytest.ini`` file:

.. code-block:: ini

   [pytest]
   filterwarnings =
       ignore::pytest.RemovedInPytest4Warning

But this will stop working when pytest ``4.1`` is released.

**If you have concerns** about the removal of a specific feature, please add a
comment to `4348 <https://github.com/pytest-dev/pytest/issues/4348>`__.


- `4358 <https://github.com/pytest-dev/pytest/issues/4358>`_: Remove the ``::()`` notation to denote a test class instance in node ids.

Previously, node ids that contain test instances would use ``::()`` to denote the instance like this::

   test_foo.py::Test::()::test_bar

The extra ``::()`` was puzzling to most users and has been removed, so that the test id becomes now::

   test_foo.py::Test::test_bar

This change could not accompany a deprecation period as is usual when user-facing functionality changes because
it was not really possible to detect when the functionality was being used explicitly.

The extra ``::()`` might have been removed in some places internally already,
which then led to confusion in places where it was expected, e.g. with
``--deselect`` (`4127 <https://github.com/pytest-dev/pytest/issues/4127>`_).

Test class instances are also not listed with ``--collect-only`` anymore.



Features
--------

- `4270 <https://github.com/pytest-dev/pytest/issues/4270>`_: The ``cache_dir`` option uses ``$TOX_ENV_DIR`` as prefix (if set in the environment).

This uses a different cache per tox environment by default.



Bug Fixes
---------

- `3554 <https://github.com/pytest-dev/pytest/issues/3554>`_: Fix ``CallInfo.__repr__`` for when the call is not finished yet.

3.10.1

==========================

Bug Fixes
---------

- `4287 <https://github.com/pytest-dev/pytest/issues/4287>`_: Fix nested usage of debugging plugin (pdb), e.g. with pytester's ``testdir.runpytest``.


- `4304 <https://github.com/pytest-dev/pytest/issues/4304>`_: Block the ``stepwise`` plugin if ``cacheprovider`` is also blocked, as one depends on the other.


- `4306 <https://github.com/pytest-dev/pytest/issues/4306>`_: Parse ``minversion`` as an actual version and not as dot-separated strings.


- `4310 <https://github.com/pytest-dev/pytest/issues/4310>`_: Fix duplicate collection due to multiple args matching the same packages.


- `4321 <https://github.com/pytest-dev/pytest/issues/4321>`_: Fix ``item.nodeid`` with resolved symlinks.


- `4325 <https://github.com/pytest-dev/pytest/issues/4325>`_: Fix collection of direct symlinked files, where the target does not match ``python_files``.


- `4329 <https://github.com/pytest-dev/pytest/issues/4329>`_: Fix TypeError in report_collect with _collect_report_last_write.



Trivial/Internal Changes
------------------------

- `4305 <https://github.com/pytest-dev/pytest/issues/4305>`_: Replace byte/unicode helpers in test_capture with python level syntax.

3.10.0

==========================

Features
--------

- `2619 <https://github.com/pytest-dev/pytest/issues/2619>`_: Resume capturing output after ``continue`` with ``__import__("pdb").set_trace()``.

This also adds a new ``pytest_leave_pdb`` hook, and passes in ``pdb`` to the
existing ``pytest_enter_pdb`` hook.


- `4147 <https://github.com/pytest-dev/pytest/issues/4147>`_: Add ``--sw``, ``--stepwise`` as an alternative to ``--lf -x`` for stopping at the first failure, but starting the next test invocation from that test.  See `the documentation <https://docs.pytest.org/en/latest/cache.htmlstepwise>`__ for more info.


- `4188 <https://github.com/pytest-dev/pytest/issues/4188>`_: Make ``--color`` emit colorful dots when not running in verbose mode. Earlier, it would only colorize the test-by-test output if ``--verbose`` was also passed.


- `4225 <https://github.com/pytest-dev/pytest/issues/4225>`_: Improve performance with collection reporting in non-quiet mode with terminals.

The "collecting …" message is only printed/updated every 0.5s.



Bug Fixes
---------

- `2701 <https://github.com/pytest-dev/pytest/issues/2701>`_: Fix false ``RemovedInPytest4Warning: usage of Session... is deprecated, please use pytest`` warnings.


- `4046 <https://github.com/pytest-dev/pytest/issues/4046>`_: Fix problems with running tests in package ``__init__.py`` files.


- `4260 <https://github.com/pytest-dev/pytest/issues/4260>`_: Swallow warnings during anonymous compilation of source.


- `4262 <https://github.com/pytest-dev/pytest/issues/4262>`_: Fix access denied error when deleting stale directories created by ``tmpdir`` / ``tmp_path``.


- `611 <https://github.com/pytest-dev/pytest/issues/611>`_: Naming a fixture ``request`` will now raise a warning: the ``request`` fixture is internal and
should not be overwritten as it will lead to internal errors.

- `4266 <https://github.com/pytest-dev/pytest/issues/4266>`_: Handle (ignore) exceptions raised during collection, e.g. with Django's LazySettings proxy class.



Improved Documentation
----------------------

- `4255 <https://github.com/pytest-dev/pytest/issues/4255>`_: Added missing documentation about the fact that module names passed to filter warnings are not regex-escaped.



Trivial/Internal Changes
------------------------

- `4272 <https://github.com/pytest-dev/pytest/issues/4272>`_: Display cachedir also in non-verbose mode if non-default.


- `4277 <https://github.com/pytest-dev/pytest/issues/4277>`_: pdb: improve message about output capturing with ``set_trace``.

Do not display "IO-capturing turned off/on" when ``-s`` is used to avoid
confusion.


- `4279 <https://github.com/pytest-dev/pytest/issues/4279>`_: Improve message and stack level of warnings issued by ``monkeypatch.setenv`` when the value of the environment variable is not a ``str``.

3.9.3

=========================

Bug Fixes
---------

- `4174 <https://github.com/pytest-dev/pytest/issues/4174>`_: Fix "ValueError: Plugin already registered" with conftest plugins via symlink.


- `4181 <https://github.com/pytest-dev/pytest/issues/4181>`_: Handle race condition between creation and deletion of temporary folders.


- `4221 <https://github.com/pytest-dev/pytest/issues/4221>`_: Fix bug where the warning summary at the end of the test session was not showing the test where the warning was originated.


- `4243 <https://github.com/pytest-dev/pytest/issues/4243>`_: Fix regression when ``stacklevel`` for warnings was passed as positional argument on python2.



Improved Documentation
----------------------

- `3851 <https://github.com/pytest-dev/pytest/issues/3851>`_: Add reference to ``empty_parameter_set_mark`` ini option in documentation of ``pytest.mark.parametrize``



Trivial/Internal Changes
------------------------

- `4028 <https://github.com/pytest-dev/pytest/issues/4028>`_: Revert patching of ``sys.breakpointhook`` since it appears to do nothing.


- `4233 <https://github.com/pytest-dev/pytest/issues/4233>`_: Apply an import sorter (``reorder-python-imports``) to the codebase.


- `4248 <https://github.com/pytest-dev/pytest/issues/4248>`_: Remove use of unnecessary compat shim, six.binary_type

3.9.2

=========================

Bug Fixes
---------

- `2909 <https://github.com/pytest-dev/pytest/issues/2909>`_: Improve error message when a recursive dependency between fixtures is detected.


- `3340 <https://github.com/pytest-dev/pytest/issues/3340>`_: Fix logging messages not shown in hooks ``pytest_sessionstart()`` and ``pytest_sessionfinish()``.


- `3533 <https://github.com/pytest-dev/pytest/issues/3533>`_: Fix unescaped XML raw objects in JUnit report for skipped tests


- `3691 <https://github.com/pytest-dev/pytest/issues/3691>`_: Python 2: safely format warning message about passing unicode strings to ``warnings.warn``, which may cause
surprising ``MemoryError`` exception when monkey patching ``warnings.warn`` itself.


- `4026 <https://github.com/pytest-dev/pytest/issues/4026>`_: Improve error message when it is not possible to determine a function's signature.


- `4177 <https://github.com/pytest-dev/pytest/issues/4177>`_: Pin ``setuptools>=40.0`` to support ``py_modules`` in ``setup.cfg``


- `4179 <https://github.com/pytest-dev/pytest/issues/4179>`_: Restore the tmpdir behaviour of symlinking the current test run.


- `4192 <https://github.com/pytest-dev/pytest/issues/4192>`_: Fix filename reported by ``warnings.warn`` when using ``recwarn`` under python2.

3.9.1

=========================

Features
--------

- `4159 <https://github.com/pytest-dev/pytest/issues/4159>`_: For test-suites containing test classes, the information about the subclassed
module is now output only if a higher verbosity level is specified (at least
"-vv").

3.9.0

=========================================================================

Deprecations
------------

- `3616 <https://github.com/pytest-dev/pytest/issues/3616>`_: The following accesses have been documented as deprecated for years, but are now actually emitting deprecation warnings.

* Access of ``Module``, ``Function``, ``Class``, ``Instance``, ``File`` and ``Item`` through ``Node`` instances. Now
 users will this warning::

       usage of Function.Module is deprecated, please use pytest.Module instead

 Users should just ``import pytest`` and access those objects using the ``pytest`` module.

* ``request.cached_setup``, this was the precursor of the setup/teardown mechanism available to fixtures. You can
 consult `funcarg comparison section in the docs <https://docs.pytest.org/en/latest/funcarg_compare.html>`_.

* Using objects named ``"Class"`` as a way to customize the type of nodes that are collected in ``Collector``
 subclasses has been deprecated. Users instead should use ``pytest_collect_make_item`` to customize node types during
 collection.

 This issue should affect only advanced plugins who create new collection types, so if you see this warning
 message please contact the authors so they can change the code.

* The warning that produces the message below has changed to ``RemovedInPytest4Warning``::

       getfuncargvalue is deprecated, use getfixturevalue


- `3988 <https://github.com/pytest-dev/pytest/issues/3988>`_: Add a Deprecation warning for pytest.ensuretemp as it was deprecated since a while.



Features
--------

- `2293 <https://github.com/pytest-dev/pytest/issues/2293>`_: Improve usage errors messages by hiding internal details which can be distracting and noisy.

This has the side effect that some error conditions that previously raised generic errors (such as
``ValueError`` for unregistered marks) are now raising ``Failed`` exceptions.


- `3332 <https://github.com/pytest-dev/pytest/issues/3332>`_: Improve the error displayed when a ``conftest.py`` file could not be imported.

In order to implement this, a new ``chain`` parameter was added to ``ExceptionInfo.getrepr``
to show or hide chained tracebacks in Python 3 (defaults to ``True``).


- `3849 <https://github.com/pytest-dev/pytest/issues/3849>`_: Add ``empty_parameter_set_mark=fail_at_collect`` ini option for raising an exception when parametrize collects an empty set.


- `3964 <https://github.com/pytest-dev/pytest/issues/3964>`_: Log messages generated in the collection phase are shown when
live-logging is enabled and/or when they are logged to a file.


- `3985 <https://github.com/pytest-dev/pytest/issues/3985>`_: Introduce ``tmp_path`` as a fixture providing a Path object.


- `4013 <https://github.com/pytest-dev/pytest/issues/4013>`_: Deprecation warnings are now shown even if you customize the warnings filters yourself. In the previous version
any customization would override pytest's filters and deprecation warnings would fall back to being hidden by default.


- `4073 <https://github.com/pytest-dev/pytest/issues/4073>`_: Allow specification of timeout for ``Testdir.runpytest_subprocess()`` and ``Testdir.run()``.


- `4098 <https://github.com/pytest-dev/pytest/issues/4098>`_: Add returncode argument to pytest.exit() to exit pytest with a specific return code.


- `4102 <https://github.com/pytest-dev/pytest/issues/4102>`_: Reimplement ``pytest.deprecated_call`` using ``pytest.warns`` so it supports the ``match='...'`` keyword argument.

This has the side effect that ``pytest.deprecated_call`` now raises ``pytest.fail.Exception`` instead
of ``AssertionError``.


- `4149 <https://github.com/pytest-dev/pytest/issues/4149>`_: Require setuptools>=30.3 and move most of the metadata to ``setup.cfg``.



Bug Fixes
---------

- `2535 <https://github.com/pytest-dev/pytest/issues/2535>`_: Improve error message when test functions of ``unittest.TestCase`` subclasses use a parametrized fixture.


- `3057 <https://github.com/pytest-dev/pytest/issues/3057>`_: ``request.fixturenames`` now correctly returns the name of fixtures created by ``request.getfixturevalue()``.


- `3946 <https://github.com/pytest-dev/pytest/issues/3946>`_: Warning filters passed as command line options using ``-W`` now take precedence over filters defined in ``ini``
configuration files.


- `4066 <https://github.com/pytest-dev/pytest/issues/4066>`_: Fix source reindenting by using ``textwrap.dedent`` directly.


- `4102 <https://github.com/pytest-dev/pytest/issues/4102>`_: ``pytest.warn`` will capture previously-warned warnings in Python 2. Previously they were never raised.


- `4108 <https://github.com/pytest-dev/pytest/issues/4108>`_: Resolve symbolic links for args.

This fixes running ``pytest tests/test_foo.py::test_bar``, where ``tests``
is a symlink to ``project/app/tests``:
previously ``project/app/conftest.py`` would be ignored for fixtures then.


- `4132 <https://github.com/pytest-dev/pytest/issues/4132>`_: Fix duplicate printing of internal errors when using ``--pdb``.


- `4135 <https://github.com/pytest-dev/pytest/issues/4135>`_: pathlib based tmpdir cleanup now correctly handles symlinks in the folder.


- `4152 <https://github.com/pytest-dev/pytest/issues/4152>`_: Display the filename when encountering ``SyntaxWarning``.



Improved Documentation
----------------------

- `3713 <https://github.com/pytest-dev/pytest/issues/3713>`_: Update usefixtures documentation to clarify that it can't be used with fixture functions.


- `4058 <https://github.com/pytest-dev/pytest/issues/4058>`_: Update fixture documentation to specify that a fixture can be invoked twice in the scope it's defined for.


- `4064 <https://github.com/pytest-dev/pytest/issues/4064>`_: According to unittest.rst, setUpModule and tearDownModule were not implemented, but it turns out they are. So updated the documentation for unittest.


- `4151 <https://github.com/pytest-dev/pytest/issues/4151>`_: Add tempir testing example to CONTRIBUTING.rst guide



Trivial/Internal Changes
------------------------

- `2293 <https://github.com/pytest-dev/pytest/issues/2293>`_: The internal ``MarkerError`` exception has been removed.


- `3988 <https://github.com/pytest-dev/pytest/issues/3988>`_: Port the implementation of tmpdir to pathlib.


- `4063 <https://github.com/pytest-dev/pytest/issues/4063>`_: Exclude 0.00 second entries from ``--duration`` output unless ``-vv`` is passed on the command-line.


- `4093 <https://github.com/pytest-dev/pytest/issues/4093>`_: Fixed formatting of string literals in internal tests.

3.8.2

=========================

Deprecations and Removals
-------------------------

- `4036 <https://github.com/pytest-dev/pytest/issues/4036>`_: The ``item`` parameter of ``pytest_warning_captured`` hook is now documented as deprecated. We realized only after
the ``3.8`` release that this parameter is incompatible with ``pytest-xdist``.

Our policy is to not deprecate features during bugfix releases, but in this case we believe it makes sense as we are
only documenting it as deprecated, without issuing warnings which might potentially break test suites. This will get
the word out that hook implementers should not use this parameter at all.

In a future release ``item`` will always be ``None`` and will emit a proper warning when a hook implementation
makes use of it.



Bug Fixes
---------

- `3539 <https://github.com/pytest-dev/pytest/issues/3539>`_: Fix reload on assertion rewritten modules.


- `4034 <https://github.com/pytest-dev/pytest/issues/4034>`_: The ``.user_properties`` attribute of ``TestReport`` objects is a list
of (name, value) tuples, but could sometimes be instantiated as a tuple
of tuples.  It is now always a list.


- `4039 <https://github.com/pytest-dev/pytest/issues/4039>`_: No longer issue warnings about using ``pytest_plugins`` in non-top-level directories when using ``--pyargs``: the
current ``--pyargs`` mechanism is not reliable and might give false negatives.


- `4040 <https://github.com/pytest-dev/pytest/issues/4040>`_: Exclude empty reports for passed tests when ``-rP`` option is used.


- `4051 <https://github.com/pytest-dev/pytest/issues/4051>`_: Improve error message when an invalid Python expression is passed to the ``-m`` option.


- `4056 <https://github.com/pytest-dev/pytest/issues/4056>`_: ``MonkeyPatch.setenv`` and ``MonkeyPatch.delenv`` issue a warning if the environment variable name is not ``str`` on Python 2.

In Python 2, adding ``unicode`` keys to ``os.environ`` causes problems with ``subprocess`` (and possible other modules),
making this a subtle bug specially susceptible when used with ``from __future__ import unicode_literals``.



Improved Documentation
----------------------

- `3928 <https://github.com/pytest-dev/pytest/issues/3928>`_: Add possible values for fixture scope to docs.
Links

@jason-neal jason-neal merged commit 8fbe5cf into develop Dec 10, 2018
@jason-neal jason-neal deleted the pyup/scheduled-update-2018-12-01 branch December 10, 2018 03:54
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