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Scheduled monthly dependency update for September #96

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@pyup-bot pyup-bot commented Sep 1, 2019

Update numpy from 1.17.0 to 1.17.1.

Changelog

1.17.1

==========================

This release contains a number of fixes for bugs reported against NumPy 1.17.0
along with a few documentation and build improvements.  The Python versions
supported are 3.5-3.7, note that Python 2.7 has been dropped.  Python 3.8b3
should work with the released source packages, but there are no future
guarantees.

Downstream developers should use Cython >= 0.29.13 for Python 3.8 support and
OpenBLAS >= 3.7 to avoid problems on the Skylake architecture. The NumPy wheels
on PyPI are built from the OpenBLAS development branch in order to avoid those
problems.


Contributors
============

A total of 17 people contributed to this release.  People with a "+" by their
names contributed a patch for the first time.

* Alexander Jung +
* Allan Haldane
* Charles Harris
* Eric Wieser
* Giuseppe Cuccu +
* Hiroyuki V. Yamazaki
* Jérémie du Boisberranger
* Kmol Yuan +
* Matti Picus
* Max Bolingbroke +
* Maxwell Aladago +
* Oleksandr Pavlyk
* Peter Andreas Entschev
* Sergei Lebedev
* Seth Troisi +
* Vladimir Pershin +
* Warren Weckesser


Pull requests merged
====================

A total of 24 pull requests were merged for this release.

* `14156 <https://github.com/numpy/numpy/pull/14156>`__: TST: Allow fuss in testing strided/non-strided exp/log loops
* `14157 <https://github.com/numpy/numpy/pull/14157>`__: BUG: avx2_scalef_ps must be static
* `14158 <https://github.com/numpy/numpy/pull/14158>`__: BUG: Remove stray print that causes a SystemError on python 3.7.
* `14159 <https://github.com/numpy/numpy/pull/14159>`__: BUG: Fix DeprecationWarning in python 3.8.
* `14160 <https://github.com/numpy/numpy/pull/14160>`__: BLD: Add missing gcd/lcm definitions to npy_math.h
* `14161 <https://github.com/numpy/numpy/pull/14161>`__: DOC, BUILD: cleanups and fix (again) 'build dist'
* `14166 <https://github.com/numpy/numpy/pull/14166>`__: TST: Add 3.8-dev to travisCI testing.
* `14194 <https://github.com/numpy/numpy/pull/14194>`__: BUG: Remove the broken clip wrapper (Backport)
* `14198 <https://github.com/numpy/numpy/pull/14198>`__: DOC: Fix hermitian argument docs in svd.
* `14199 <https://github.com/numpy/numpy/pull/14199>`__: MAINT: Workaround for Intel compiler bug leading to failing test
* `14200 <https://github.com/numpy/numpy/pull/14200>`__: TST: Clean up of test_pocketfft.py
* `14201 <https://github.com/numpy/numpy/pull/14201>`__: BUG: Make advanced indexing result on read-only subclass writeable...
* `14236 <https://github.com/numpy/numpy/pull/14236>`__: BUG: Fixed default BitGenerator name
* `14237 <https://github.com/numpy/numpy/pull/14237>`__: ENH: add c-imported modules for freeze analysis in np.random
* `14296 <https://github.com/numpy/numpy/pull/14296>`__: TST: Pin pytest version to 5.0.1
* `14301 <https://github.com/numpy/numpy/pull/14301>`__: BUG: Fix leak in the f2py-generated module init and `PyMem_Del`...
* `14302 <https://github.com/numpy/numpy/pull/14302>`__: BUG: Fix formatting error in exception message
* `14307 <https://github.com/numpy/numpy/pull/14307>`__: MAINT: random: Match type of SeedSequence.pool_size to DEFAULT_POOL_SIZE.
* `14308 <https://github.com/numpy/numpy/pull/14308>`__: BUG: Fix numpy.random bug in platform detection
* `14309 <https://github.com/numpy/numpy/pull/14309>`__: ENH: Enable huge pages in all Linux builds
* `14330 <https://github.com/numpy/numpy/pull/14330>`__: BUG: Fix segfault in `random.permutation(x)` when x is a string.
* `14338 <https://github.com/numpy/numpy/pull/14338>`__: BUG: don't fail when lexsorting some empty arrays (14228)
* `14339 <https://github.com/numpy/numpy/pull/14339>`__: BUG: Fix misuse of .names and .fields in various places (backport...
* `14345 <https://github.com/numpy/numpy/pull/14345>`__: BUG: fix behavior of structured_to_unstructured on non-trivial...
* `14350 <https://github.com/numpy/numpy/pull/14350>`__: REL: Prepare 1.17.1 release


==========================
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Update scipy from 1.3.0 to 1.3.1.

The bot wasn't able to find a changelog for this release. Got an idea?

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Update hypothesis from 4.32.2 to 4.34.0.

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Update pre-commit from 1.17.0 to 1.18.3.

Changelog

1.18.3

===================

Fixes
- Fix `node_modules` plugin installation on windows
 - 1123 issue by henryykt.
 - 1122 PR by henryykt.

1.18.2

===================

Fixes
- Make default python lookup more deterministic to avoid redundant installs
 - 1117 PR by scop.

1.18.1

===================

Fixes
- Fix installation of `rust` hooks with new `cargo`
 - 1112 issue by zimbatm.
 - 1113 PR by zimbatm.

1.18.0

===================

Features
- Use the current running executable if it matches the requested
`language_version`
 - 1062 PR by asottile.
- Print the stage when a hook is not found
 - 1078 issue by madkinsz.
 - 1079 PR by madkinsz.
- `pre-commit autoupdate` now supports non-`master` default branches
 - 1089 PR by asottile.
- Add `pre-commit init-templatedir` which makes it easier to automatically
enable `pre-commit` in cloned repositories.
 - 1084 issue by ssbarnea.
 - 1090 PR by asottile.
 - 1107 PR by asottile.
- pre-commit's color can be controlled using
`PRE_COMMIT_COLOR={auto,always,never}`
 - 1073 issue by saper.
 - 1092 PR by geieredgar.
 - 1098 PR by geieredgar.
- pre-commit's color can now be disabled using `TERM=dumb`
 - 1073 issue by saper.
 - 1103 PR by asottile.
- pre-commit now supports `docker` based hooks on windows
 - 1072 by cz-fish.
 - 1093 PR by geieredgar.

Fixes
- Fix shallow clone
 - 1077 PR by asottile.
- Fix autoupdate version flip flop when using shallow cloning
 - 1076 issue by mxr.
 - 1088 PR by asottile.
- Fix autoupdate when the current revision is invalid
 - 1088 PR by asottile.

Misc.
- Replace development instructions with `tox --devenv ...`
 - 1032 issue by yoavcaspi.
 - 1067 PR by asottile.
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Update pytest from 5.0.1 to 5.1.2.

Changelog

5.1.2

=========================

Bug Fixes
---------

- `2270 <https://github.com/pytest-dev/pytest/issues/2270>`_: Fixed ``self`` reference in function-scoped fixtures defined plugin classes: previously ``self``
would be a reference to a *test* class, not the *plugin* class.


- `570 <https://github.com/pytest-dev/pytest/issues/570>`_: Fixed long standing issue where fixture scope was not respected when indirect fixtures were used during
parametrization.


- `5782 <https://github.com/pytest-dev/pytest/issues/5782>`_: Fix decoding error when printing an error response from ``--pastebin``.


- `5786 <https://github.com/pytest-dev/pytest/issues/5786>`_: Chained exceptions in test and collection reports are now correctly serialized, allowing plugins like
``pytest-xdist`` to display them properly.


- `5792 <https://github.com/pytest-dev/pytest/issues/5792>`_: Windows: Fix error that occurs in certain circumstances when loading
``conftest.py`` from a working directory that has casing other than the one stored
in the filesystem (e.g., ``c:\test`` instead of ``C:\test``).

5.1.1

=========================

Bug Fixes
---------

- `5751 <https://github.com/pytest-dev/pytest/issues/5751>`_: Fixed ``TypeError`` when importing pytest on Python 3.5.0 and 3.5.1.

5.1.0

=========================

Removals
--------

- `5180 <https://github.com/pytest-dev/pytest/issues/5180>`_: As per our policy, the following features have been deprecated in the 4.X series and are now
removed:

* ``Request.getfuncargvalue``: use ``Request.getfixturevalue`` instead.

* ``pytest.raises`` and ``pytest.warns`` no longer support strings as the second argument.

* ``message`` parameter of ``pytest.raises``.

* ``pytest.raises``, ``pytest.warns`` and ``ParameterSet.param`` now use native keyword-only
 syntax. This might change the exception message from previous versions, but they still raise
 ``TypeError`` on unknown keyword arguments as before.

* ``pytest.config`` global variable.

* ``tmpdir_factory.ensuretemp`` method.

* ``pytest_logwarning`` hook.

* ``RemovedInPytest4Warning`` warning type.

* ``request`` is now a reserved name for fixtures.


For more information consult
`Deprecations and Removals <https://docs.pytest.org/en/latest/deprecations.html>`__ in the docs.


- `5565 <https://github.com/pytest-dev/pytest/issues/5565>`_: Removed unused support code for `unittest2 <https://pypi.org/project/unittest2/>`__.

The ``unittest2`` backport module is no longer
necessary since Python 3.3+, and the small amount of code in pytest to support it also doesn't seem
to be used: after removed, all tests still pass unchanged.

Although our policy is to introduce a deprecation period before removing any features or support
for third party libraries, because this code is apparently not used
at all (even if ``unittest2`` is used by a test suite executed by pytest), it was decided to
remove it in this release.

If you experience a regression because of this, please
`file an issue <https://github.com/pytest-dev/pytest/issues/new>`__.


- `5615 <https://github.com/pytest-dev/pytest/issues/5615>`_: ``pytest.fail``, ``pytest.xfail`` and ``pytest.skip`` no longer support bytes for the message argument.

This was supported for Python 2 where it was tempting to use ``"message"``
instead of ``u"message"``.

Python 3 code is unlikely to pass ``bytes`` to these functions. If you do,
please decode it to an ``str`` beforehand.



Features
--------

- `5564 <https://github.com/pytest-dev/pytest/issues/5564>`_: New ``Config.invocation_args`` attribute containing the unchanged arguments passed to ``pytest.main()``.


- `5576 <https://github.com/pytest-dev/pytest/issues/5576>`_: New `NUMBER <https://docs.pytest.org/en/latest/doctest.htmlusing-doctest-options>`__
option for doctests to ignore irrelevant differences in floating-point numbers.
Inspired by Sébastien Boisgérault's `numtest <https://github.com/boisgera/numtest>`__
extension for doctest.



Improvements
------------

- `5471 <https://github.com/pytest-dev/pytest/issues/5471>`_: JUnit XML now includes a timestamp and hostname in the testsuite tag.


- `5707 <https://github.com/pytest-dev/pytest/issues/5707>`_: Time taken to run the test suite now includes a human-readable representation when it takes over
60 seconds, for example::

   ===== 2 failed in 102.70s (0:01:42) =====



Bug Fixes
---------

- `4344 <https://github.com/pytest-dev/pytest/issues/4344>`_: Fix RuntimeError/StopIteration when trying to collect package with "__init__.py" only.


- `5115 <https://github.com/pytest-dev/pytest/issues/5115>`_: Warnings issued during ``pytest_configure`` are explicitly not treated as errors, even if configured as such, because it otherwise completely breaks pytest.


- `5477 <https://github.com/pytest-dev/pytest/issues/5477>`_: The XML file produced by ``--junitxml`` now correctly contain a ``<testsuites>`` root element.


- `5523 <https://github.com/pytest-dev/pytest/issues/5523>`_: Fixed using multiple short options together in the command-line (for example ``-vs``) in Python 3.8+.


- `5524 <https://github.com/pytest-dev/pytest/issues/5524>`_: Fix issue where ``tmp_path`` and ``tmpdir`` would not remove directories containing files marked as read-only,
which could lead to pytest crashing when executed a second time with the ``--basetemp`` option.


- `5537 <https://github.com/pytest-dev/pytest/issues/5537>`_: Replace ``importlib_metadata`` backport with ``importlib.metadata`` from the
standard library on Python 3.8+.


- `5578 <https://github.com/pytest-dev/pytest/issues/5578>`_: Improve type checking for some exception-raising functions (``pytest.xfail``, ``pytest.skip``, etc)
so they provide better error messages when users meant to use marks (for example ``pytest.xfail``
instead of ``pytest.mark.xfail``).


- `5606 <https://github.com/pytest-dev/pytest/issues/5606>`_: Fixed internal error when test functions were patched with objects that cannot be compared
for truth values against others, like ``numpy`` arrays.


- `5634 <https://github.com/pytest-dev/pytest/issues/5634>`_: ``pytest.exit`` is now correctly handled in ``unittest`` cases.
This makes ``unittest`` cases handle ``quit`` from pytest's pdb correctly.


- `5650 <https://github.com/pytest-dev/pytest/issues/5650>`_: Improved output when parsing an ini configuration file fails.


- `5701 <https://github.com/pytest-dev/pytest/issues/5701>`_: Fix collection of ``staticmethod`` objects defined with ``functools.partial``.


- `5734 <https://github.com/pytest-dev/pytest/issues/5734>`_: Skip async generator test functions, and update the warning message to refer to ``async def`` functions.



Improved Documentation
----------------------

- `5669 <https://github.com/pytest-dev/pytest/issues/5669>`_: Add docstring for ``Testdir.copy_example``.



Trivial/Internal Changes
------------------------

- `5095 <https://github.com/pytest-dev/pytest/issues/5095>`_: XML files of the ``xunit2`` family are now validated against the schema by pytest's own test suite
to avoid future regressions.


- `5516 <https://github.com/pytest-dev/pytest/issues/5516>`_: Cache node splitting function which can improve collection performance in very large test suites.


- `5603 <https://github.com/pytest-dev/pytest/issues/5603>`_: Simplified internal ``SafeRepr`` class and removed some dead code.


- `5664 <https://github.com/pytest-dev/pytest/issues/5664>`_: When invoking pytest's own testsuite with ``PYTHONDONTWRITEBYTECODE=1``,
the ``test_xfail_handling`` test no longer fails.


- `5684 <https://github.com/pytest-dev/pytest/issues/5684>`_: Replace manual handling of ``OSError.errno`` in the codebase by new ``OSError`` subclasses (``PermissionError``, ``FileNotFoundError``, etc.).
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Update python-coveralls from 2.9.2 to 2.9.3.

The bot wasn't able to find a changelog for this release. Got an idea?

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Coverage Status

Coverage remained the same at 95.331% when pulling 44c5df7 on pyup/scheduled-update-2019-09-01 into 75b270f on develop.

@pyup-bot
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pyup-bot commented Oct 1, 2019

Closing this in favor of #97

@pyup-bot pyup-bot closed this Oct 1, 2019
@jason-neal jason-neal deleted the pyup/scheduled-update-2019-09-01 branch October 1, 2019 16:35
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