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Results - grow13 - 12.txt
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Results - grow13 - 12.txt
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Nested ANOVA Results for: Moss growth 12-24 months ( grow13 )
Transformation used: Y
Expt. Time: t3, t4
Chamber: Ambient, Full Chamber
Fragmentation: Contiguous, Full Corridors, Pseudo-Corridors, Isolated
Patches: Inner, Outer
Thu Dec 13 17:58:06 2012
================================================================
================ Patch scale Results =========================
Y.trans ~ Time * Chamber * Frag * Position
~1 | Block/Time/Chamber/Frag
numDF denDF F-value p-value
(Intercept) 1 98 120.31772 <.0001
Time 1 7 1.67473 0.2367
Chamber 1 14 52.24883 <.0001
Frag 3 84 1.59001 0.1979
Position 1 98 61.01061 <.0001
Time:Chamber 1 14 1.33768 0.2668
Time:Frag 3 84 0.68856 0.5615
Chamber:Frag 3 84 2.40773 0.0729
Time:Position 1 98 0.11965 0.7302
Chamber:Position 1 98 62.37940 <.0001
Frag:Position 3 98 0.58009 0.6295
Time:Chamber:Frag 3 84 0.31563 0.8140
Time:Chamber:Position 1 98 3.26521 0.0738
Time:Frag:Position 3 98 0.13452 0.9393
Chamber:Frag:Position 3 98 1.74002 0.1638
Time:Chamber:Frag:Position 3 98 0.74191 0.5296
% latex table generated in R 2.12.0 by xtable 1.5-6 package
% Thu Dec 13 17:58:36 2012
\begin{table}[ht]
\begin{center}
\begin{tabular}{rrrrr}
\hline
& numDF & denDF & F-value & p-value \\
\hline
(Intercept) & 1 & 98 & 120.3 & 0.000 \\
Time & 1 & 7 & 1.7 & 0.237 \\
Chamber & 1 & 14 & 52.2 & 0.000 \\
Frag & 3 & 84 & 1.6 & 0.198 \\
Position & 1 & 98 & 61.0 & 0.000 \\
Time:Chamber & 1 & 14 & 1.3 & 0.267 \\
Time:Frag & 3 & 84 & 0.7 & 0.562 \\
Chamber:Frag & 3 & 84 & 2.4 & 0.073 \\
Time:Position & 1 & 98 & 0.1 & 0.730 \\
Chamber:Position & 1 & 98 & 62.4 & 0.000 \\
Frag:Position & 3 & 98 & 0.6 & 0.629 \\
Time:Chamber:Frag & 3 & 84 & 0.3 & 0.814 \\
Time:Chamber:Position & 1 & 98 & 3.3 & 0.074 \\
Time:Frag:Position & 3 & 98 & 0.1 & 0.939 \\
Chamber:Frag:Position & 3 & 98 & 1.7 & 0.164 \\
Time:Chamber:Frag:Position & 3 & 98 & 0.7 & 0.530 \\
\hline
\end{tabular}
\end{center}
\end{table}
Simultaneous Tests for General Linear Hypotheses
Multiple Comparisons of Means: Tukey Contrasts
Fit: lme.formula(fixed = Y.trans ~ CxP, data = SECCp, random = Yp.random)
Linear Hypotheses:
Estimate Std. Error z value Pr(>|z|)
Full Chamber.Inner - Ambient.Inner == 0 0.3891 0.8144 0.478 0.964
Ambient.Outer - Ambient.Inner == 0 0.1343 0.8127 0.165 0.998
Full Chamber.Outer - Ambient.Inner == 0 -8.4563 0.8111 -10.425 <1e-05 ***
Ambient.Outer - Full Chamber.Inner == 0 -0.2549 0.8318 -0.306 0.990
Full Chamber.Outer - Full Chamber.Inner == 0 -8.8454 0.7989 -11.072 <1e-05 ***
Full Chamber.Outer - Ambient.Outer == 0 -8.5905 0.8283 -10.372 <1e-05 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Adjusted p values reported -- single-step method)
Simultaneous Tests for General Linear Hypotheses
Fit: lme.formula(fixed = Y.trans ~ Chamber * Position, data = SECCp,
random = Yp.random, na.action = na.omit, control = lmc)
Linear Hypotheses:
Estimate Std. Error z value Pr(>|z|)
Ambient:Inner == 0 8.6235 0.7761 11.111 <1e-08 ***
Full Chamber:Inner == 0 9.0126 0.7795 11.562 <1e-08 ***
Ambient:Outer == 0 8.7577 0.7942 11.027 <1e-08 ***
Full Chamber:Outer == 0 0.1668 0.7763 0.215 0.999
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Adjusted p values reported -- single-step method)
model: Y.trans ~ Time * Chamber * Frag * Position
Time*Chamber*Frag*Position effect
, , Frag = Contiguous, Position = Inner
Chamber
Time Ambient Full Chamber
t3 10.38000 8.137500
t4 10.14625 9.132074
, , Frag = Full Corridors, Position = Inner
Chamber
Time Ambient Full Chamber
t3 6.1275 9.7800
t4 7.6375 10.9775
, , Frag = Pseudo-Corridors, Position = Inner
Chamber
Time Ambient Full Chamber
t3 6.726250 8.175000
t4 7.465042 8.425446
, , Frag = Isolated, Position = Inner
Chamber
Time Ambient Full Chamber
t3 10.08500 7.23875
t4 10.46469 10.30629
, , Frag = Contiguous, Position = Outer
Chamber
Time Ambient Full Chamber
t3 9.325666 2.81625
t4 8.625295 2.05750
, , Frag = Full Corridors, Position = Outer
Chamber
Time Ambient Full Chamber
t3 6.900000 0.2076321
t4 9.493805 -1.2387500
, , Frag = Pseudo-Corridors, Position = Outer
Chamber
Time Ambient Full Chamber
t3 7.22500 0.13250000
t4 9.03289 0.06863533
, , Frag = Isolated, Position = Outer
Chamber
Time Ambient Full Chamber
t3 6.804049 -0.76375
t4 12.582500 -1.94000
<============================= END ============================>