connectome_tractography

Matlab code for connectome analysis with tractography data

See the help header in Matlab for full details.

Dependencies include: BCT 2019_03_03, contest, versatility, matlab_bgl, powerlaws_full, schemaball, BrainNetViewer

Inputs: connectivity matrix & parcellation template co-ordinates

To get the above either use tract_van.sh for processing of tractrography data or alternatively just use your own data.

To start you just need to enter patient path data in section A1.

        %% A1. Load data

        %This should be the only part required to be set manually

        %Directory
        directory = '/path_to_my_data';

        %Patient ID
        patientID = 'my_patient_ID';

        %Template name
        template = 'AAL90';