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@jbloomlab

jbloomlab

Jesse Bloom's lab GitHub account

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  1. phydms phydms Public

    phylogenetic analyses informed by deep mutational scanning data

    HTML 14 4

  2. dms_tools2 dms_tools2 Public

    software for the analysis and visualization of deep mutational scanning data

    Python 29 20

  3. dmslogo dmslogo Public

    draw sequence logos tailored to deep mutational scanning (DMS) data

    Jupyter Notebook 11 1

  4. neutcurve neutcurve Public

    Fit and plot neutralization curves

    Jupyter Notebook 9 3

Repositories

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Showing 10 of 87 repositories
  • ZIKV_DMS_NS5_EvansLab Public

    deep mutational scanning of ZIKV E protein +/- IFN with Matt Evans lab

    jbloomlab/ZIKV_DMS_NS5_EvansLab’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jun 24, 2024
  • ZIKV_DMS_NS3_EvansLab Public

    Deep mutational scanning of Zika virus strain MR766 nonstructural protein 3 (NS3) with Matt Evans lab

    jbloomlab/ZIKV_DMS_NS3_EvansLab’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jun 18, 2024
  • alignparse Public

    Align sequences and then parse features.

    jbloomlab/alignparse’s past year of commit activity
    Jupyter Notebook 17 9 0 0 Updated May 23, 2024
  • SARS2-RBD-escape-mutants Public

    designed escape mutants of the RBD of SARS-CoV-2 that contain potential future antigenic mutations

    jbloomlab/SARS2-RBD-escape-mutants’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated May 2, 2024
  • seqneut-pipeline Public

    Pipeline for analyzing sequencing-based neutralization assays

    jbloomlab/seqneut-pipeline’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated May 1, 2024
  • SARS2-cocktail-vax Public

    Cocktail of SARS-CoV-2 spikes with predicted future mutation

    jbloomlab/SARS2-cocktail-vax’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 29, 2024
  • SARS2-mut-fitness Public

    Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates

    jbloomlab/SARS2-mut-fitness’s past year of commit activity
    Jupyter Notebook 19 MIT 5 3 1 Updated Apr 25, 2024
  • SARS-CoV-2-RBD_MAP_Karolinska Public
    jbloomlab/SARS-CoV-2-RBD_MAP_Karolinska’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 21, 2024
  • SARS2-spike-predictor-phenos Public

    SARS-CoV-2 spike phenotypes (from DMS and other sources) potentially useful for predicting evolution

    jbloomlab/SARS2-spike-predictor-phenos’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 18, 2024
  • neutcurve Public

    Fit and plot neutralization curves

    jbloomlab/neutcurve’s past year of commit activity
    Jupyter Notebook 9 GPL-3.0 3 0 0 Updated Apr 11, 2024
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