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  1. coaltrace coaltrace Public

    Simulating genealogies using charged particles

    HTML 30 6

  2. dynamics-practical dynamics-practical Public

    Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data

    32 25

  3. blab/blotter blab/blotter Public

    bedford lab research

    HTML 67 93

  4. sismid sismid Public

    Pathogen evolution, selection and immunity

    Jupyter Notebook 46 24

  5. nextstrain/auspice nextstrain/auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 293 162

  6. nextstrain/augur nextstrain/augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 268 128