R Markdown document to reproduce the data anlaysis on the development and progression of the Mycobacterium microti infection in a bank vole (Myodes glareolus) animal model. https://doi.org/10.3390/microorganisms10010135
The input data can be found inside the data/ directory, and the plots in .jpg and .svg format can be found in the plot/ directory. To obtain the interactive heatmap (html) summarising the disease progression, the chunk with the head: Figure 5A | Summary of the pathology can be run (after loading the required libraries).
The code for the analysis and figures can be found in the R Markdown document: code.rmd
Judit Burgaya Ventura (BurgayaVentura.Judit@mh-hannover.de)