You can find scripts and commands used in the article "Genomic insights into niche partitioning across sediment depth among anaerobic methane-oxidizing archaea in global methane seeps" from here.
All data supporting the findings of this study are available within the article and its supplementary information files, or from the corresponding authors upon request. (email: jchenek@connect.ust.hk)
Metagenomic sequences have been deposited in National Center for Biotechnology Information (NCBI) under the BioProject number PRJNA837106. All MAGs used in this study have been deposited in National Omics Data Encyclopedia (NODE) under the project number OEP002857.
All bioinformatics commands are available in "main_commands.txt".