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St. Francis Xavier University
- Antigonish, NS, Canada
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08:21
(UTC -03:00) - https://www.stfxmicroeco.ca/
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MGPrimerEval
MGPrimerEval PublicThis is a snakemake pipeline that determines primer mismatches to SSU rRNA in metagenomic data.
Jupyter Notebook 3
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eASV-pipeline-for-515Y-926R
eASV-pipeline-for-515Y-926R PublicThis is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
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simonscmap/c-microbial-map
simonscmap/c-microbial-map PublicCode to plot BLAST hits from Simons Foundation CMAP database with R Oce package
Python
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OTUandMetadata2CMAP
OTUandMetadata2CMAP PublicA python script for converting a traditional OTU/eASV table and associated metadata into a format that can be ingested and queried easily by the Simons Foundation CMAP database.
Shell
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