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Error to run boolean net to primes #80
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Hello, You're missing a space after the 'not' in the rule for DCAF5. For example, Can be changed to X1 and X2 are dummy nodes. The model behavior will be mostly equivalent. Another way is to reduce the nodes that have same regulators and regulates the same nodes in a same way. |
Hello Thank you for the suggestions and for finding the mistake in the rules file. How to reduce the nodes that have same regulators? Can you give an example? Thanks |
I have reduced the network as follows:
I get the below error:
|
Hi, The error is due to the missing space between not and (. |
I think your changed rule is not equivalent to the original. I'd change the rule as following: DCAF5*= X1 and X2 Note1: miR3154 is reduced since it is equivalent to miR653. I just ran it and got 8 attractors. |
This is the output file that was generated
What is error at the end of the file. Is this expected? |
It seems some of the packages are not properly installed. If you installed pystablemotifs from PyPI, you will need to install pyboolnet separately (instructions at https://github.com/hklarner/pyboolnet). This is because PyPI (apparently) does not support dependencies that are not also on PyPI. |
I have installed the packages in conda environment. pystable motifs was installed in different folder inside the environment. When I gave the path of this folder, the code ran without any errors and in the output file, I got 8 attractors Thanks |
It looks like this issue has been resolved, so I will close it now. |
Hello
I am getting an error when I tried the below command:
This is my attractors.txt file
I get the error:
Is there any error in the rules input file?
Thanks
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