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index.Rmd
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index.Rmd
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---
site: workflowr::wflow_site
title: "Home"
output:
workflowr::wflow_html:
toc: false
---
Lesson material for my [DataCamp course][dc-limma] on differential expression
analysis with [limma][].
Case studies:
* 2 groups: [Breast Cancer VDX](vdx.html)
* 3 groups: [leukemiasEset: ALL v. AML v. CML](leukemiasEset.html)
* 2x2 factorial: [Effect of low temperature on Arabidopsis](arabidopsis.html)
* Pre-processing features (genes): [Raw Arabidopsis data](pre-processing.html)
* Accounting for technical batch effects: [Response to infection with _Mycobacterium tuberculosis_](batch-effects.html)
Supplement:
* [Understanding linear models](linear-models.html)
* [The benefit of sharing information across genes](sharing.html)
[dc-limma]: https://www.datacamp.com/courses/differential-expression-analysis-in-r-with-limma
[limma]: https://bioconductor.org/packages/release/bioc/html/limma.html